3CNF

3.88 Angstrom structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BPF20855,PF21416e3cnfB1 A: a+b complex topologyX: Inner layer core protein p3-related (From Topology)H: Inner layer core protein p3-related (From Topology)T: Inner layer core protein p3-relatedF: PF20855,PF21416ECOD (1.6)
APF20855,PF21416e3cnfA1 A: a+b complex topologyX: Inner layer core protein p3-related (From Topology)H: Inner layer core protein p3-related (From Topology)T: Inner layer core protein p3-relatedF: PF20855,PF21416ECOD (1.6)
C [auth T]PF20790e3cnfT1 A: a+b complex topologyX: Reovirus guanylyltransferase (GTase) (From Topology)H: Reovirus guanylyltransferase (GTase) (From Topology)T: Reovirus guanylyltransferase (GTase)F: PF20790ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF21416Inner layer core protein VP1-like, C-terminal (VP1-like_C)Inner layer core protein VP1-like, C-terminalThis entry includes capsid proteins from cypoviruses which form the icosahedral capsid through self-assembly (they are also known as inner layer core proteins). The capsid encapsulates and protects the genomic RNA. These viruses encode VP1, VP3 and V ...This entry includes capsid proteins from cypoviruses which form the icosahedral capsid through self-assembly (they are also known as inner layer core proteins). The capsid encapsulates and protects the genomic RNA. These viruses encode VP1, VP3 and VP5 as major capsid proteins, encoded by RNA segment 1 and 3 in the case of VP1 and VP3, respectively, whereas RNA segment encoding VP5 is still unclear. This entry represents the C-terminal domain of capsid proteins from cypovirusus [1-3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
VP1- -
C [auth T]VP3- - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR049421Capsid protein VP1, small protrusion domainDomain
A, B
IPR049422Capsid protein VP1/VP3, C-terminalDomain
C [auth T]IPR048605Reovirus VP3 protein, bridge domainDomain
C [auth T]IPR048606Reovirus VP3 protein, Methyltransferase domain 2Domain
C [auth T]IPR048607Reovirus VP3 protein, Methyltransferase domain 1Domain
C [auth T]IPR048608Reovirus VP3 protein, guanylyltransferaseDomain