3CHX | pdb_00003chx

Crystal structure of Methylosinus trichosporium OB3b particulate methane monooxygenase (pMMO)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H [auth G]	SCOP2B Superfamily	Ammonia monooxygenase/methane monooxygenase, subunit C-like	8053447	3002188	SCOP2B (2022-06-29)
M [auth K]	SCOP2B Superfamily	Ammonia monooxygenase/methane monooxygenase, subunit C-like	8053447	3002188	SCOP2B (2022-06-29)
C	SCOP2 Family	Ammonia monooxygenase/methane monooxygenase, subunit C-like	8046645	4005211	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Ammonia monooxygenase/methane monooxygenase, subunit C-like	8053447	3002188	SCOP2 (2022-06-29)
L [auth J]	SCOP2 Family	Ammonia monooxygenase-like	8050419	4006879	SCOP2 (2022-06-29)
L [auth J]	SCOP2 Superfamily	Gx transporter-like	8095953	3002268	SCOP2 (2022-06-29)
G [auth F]	SCOP2B Superfamily	Gx transporter-like	8095953	3002268	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Gx transporter-like	8095953	3002268	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Monooxygenase subunit B transmembrane domain-like	8095939	3002711	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	PapD-like	8095938	3002067	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Monooxygenase subunit B C-terminal domain-like	8095940	3002712	SCOP2B (2022-06-29)
K [auth I]	SCOP2 Family	Monooxygenase subunit B copper-binding domain-like	8046392	4005056	SCOP2 (2022-06-29)
K [auth I]	SCOP2 Family	Monooxygenase subunit B transmembrane domain-like	8095936	4007811	SCOP2 (2022-06-29)
K [auth I]	SCOP2 Family	Monooxygenase subunit B C-terminal domain-like	8095937	4007812	SCOP2 (2022-06-29)
K [auth I]	SCOP2 Superfamily	PapD-like	8095938	3002067	SCOP2 (2022-06-29)
K [auth I]	SCOP2 Superfamily	Monooxygenase subunit B transmembrane domain-like	8095939	3002711	SCOP2 (2022-06-29)
K [auth I]	SCOP2 Superfamily	Monooxygenase subunit B C-terminal domain-like	8095940	3002712	SCOP2 (2022-06-29)
F [auth E]	SCOP2B Superfamily	Monooxygenase subunit B transmembrane domain-like	8095939	3002711	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	PapD-like	8095938	3002067	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	Monooxygenase subunit B C-terminal domain-like	8095940	3002712	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H [auth G]	AA_kinase	e3chxG2	A: alpha bundles	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: AA_kinase	ECOD (develop294)
M [auth K]	Ribosomal_L1	e3chxK2	A: alpha bundles	X: Glutamine synthetase-like	H: Glutamine synthetase/guanido kinase	T: Glutamine synthetase/guanido kinase	F: Ribosomal_L1	ECOD (develop294)
C	Ribosomal_S6e	e3chxC1	A: alpha bundles	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Ribosomal_S6e	ECOD (develop294)
L [auth J]	RasGEF	e3chxJ1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
G [auth F]	RasGEF	e3chxF1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
B	RasGEF	e3chxB1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
A	CblD	e3chxA1	A: alpha bundles	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: CblD	ECOD (develop294)
K [auth I]	CblD	e3chxI1	A: alpha bundles	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: CblD	ECOD (develop294)
F [auth E]	CblD	e3chxE1	A: alpha bundles	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: CblD	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H [auth G]	1.20.1050.50	Mainly Alpha	Up-down Bundle	Glutathione S-transferase Yfyf (Class Pi)	Chain A, domain 2	CATH (4.3.0)
M [auth K]	1.20.1050.50	Mainly Alpha	Up-down Bundle	Glutathione S-transferase Yfyf (Class Pi)	Chain A, domain 2	CATH (4.3.0)
C	1.20.1050.50	Mainly Alpha	Up-down Bundle	Glutathione S-transferase Yfyf (Class Pi)	Chain A, domain 2	CATH (4.3.0)
L [auth J]	1.20.1450.10	Mainly Alpha	Up-down Bundle	particulate methane monooxygenase, chain B	Ammonia/particulate methane monooxygenase, subunit A	CATH (4.3.0)
G [auth F]	1.20.1450.10	Mainly Alpha	Up-down Bundle	particulate methane monooxygenase, chain B	Ammonia/particulate methane monooxygenase, subunit A	CATH (4.3.0)
B	1.20.1450.10	Mainly Alpha	Up-down Bundle	particulate methane monooxygenase, chain B	Ammonia/particulate methane monooxygenase, subunit A	CATH (4.3.0)
A	2.60.120.570	Mainly Beta	Sandwich	Jelly Rolls	Particulate methane monooxygenase, b subunit. Chain: A, domain 1	CATH (4.3.0)
A	1.10.287.710	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
A	2.60.40.1580	Mainly Beta	Sandwich	Immunoglobulin-like	Particulate methane monooxygenase, b subunit. Chain: A, domain 3	CATH (4.3.0)
K [auth I]	2.60.120.570	Mainly Beta	Sandwich	Jelly Rolls	Particulate methane monooxygenase, b subunit. Chain: A, domain 1	CATH (4.3.0)
K [auth I]	1.10.287.710	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
K [auth I]	2.60.40.1580	Mainly Beta	Sandwich	Immunoglobulin-like	Particulate methane monooxygenase, b subunit. Chain: A, domain 3	CATH (4.3.0)
F [auth E]	2.60.120.570	Mainly Beta	Sandwich	Jelly Rolls	Particulate methane monooxygenase, b subunit. Chain: A, domain 1	CATH (4.3.0)
F [auth E]	1.10.287.710	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
F [auth E]	2.60.40.1580	Mainly Beta	Sandwich	Immunoglobulin-like	Particulate methane monooxygenase, b subunit. Chain: A, domain 3	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth M], J [auth N], O	26-residue peptide	-	-	-
D, I [auth H], N [auth L]	20-residue peptide	-	-	-
C, H [auth G], M [auth K]	PmoC	cation binding ion binding binding metal ion binding small molecule binding	-	-
B, G [auth F], L [auth J]	PmoA	-	-	-
A, F [auth E], K [auth I]	PmoB	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, H [auth G], M [auth K]	IPR006980	Ammonia monooxygenase/particulate methane monooxygenase, subunit C	Family
C, H [auth G], M [auth K]	IPR023349	Ammonia monooxygenase/particulate methane monooxygenase, subunit C domain superfamily	Homologous Superfamily
B, G [auth F], L [auth J]	IPR037001	Ammonia/particulate methane monooxygenase, subunit A superfamily	Homologous Superfamily
B, G [auth F], L [auth J]	IPR003393	Ammonia monooxygenase/particulate methane monooxygenase, subunit A	Family
A, F [auth E], K [auth I]	IPR006833	Ammonia monooxygenase/particulate methane monooxygenase, subunit B	Family
A, F [auth E], K [auth I]	IPR023141	Ammonia/methane monooxygenase, subunit B, hairpin domain superfamily	Homologous Superfamily
A, F [auth E], K [auth I]	IPR023303	Ammonia/methane monooxygenase, subunit B, C-terminal	Homologous Superfamily
A, F [auth E], K [auth I]	IPR023301	Ammonia/methane monooxygenase, subunitB, N-terminal	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, F [auth E], G [auth F] A, B, C, F [auth E], G [auth F], H [auth G], K [auth I], L [auth J], M [auth K]	OPM	Transmembrane	Alpha-helical polytopic	Methane monooxygenase	Methane monooxygenase

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, F [auth E], G [auth F] A, B, C, F [auth E], G [auth F], H [auth G], K [auth I], L [auth J], M [auth K]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, F [auth E], G [auth F] A, B, C, F [auth E], G [auth F], H [auth G], K [auth I], L [auth J], M [auth K]	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, F [auth E], G [auth F] A, B, C, F [auth E], G [auth F], H [auth G], K [auth I], L [auth J], M [auth K]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Oxygenases	Particulate methane monooxgenase (pMMO)