3CHX

Crystal structure of Methylosinus trichosporium OB3b particulate methane monooxygenase (pMMO)

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyMonooxygenase subunit B transmembrane domain-like8095939 3002711 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPapD-like8095938 3002067 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMonooxygenase subunit B C-terminal domain-like8095940 3002712 SCOP2B (2022-06-29)
F [auth E]SCOP2B SuperfamilyMonooxygenase subunit B transmembrane domain-like8095939 3002711 SCOP2B (2022-06-29)
F [auth E]SCOP2B SuperfamilyMonooxygenase subunit B C-terminal domain-like8095940 3002712 SCOP2B (2022-06-29)
F [auth E]SCOP2B SuperfamilyPapD-like8095938 3002067 SCOP2B (2022-06-29)
K [auth I]SCOP2 FamilyMonooxygenase subunit B transmembrane domain-like8095936 4007811 SCOP2 (2022-06-29)
K [auth I]SCOP2 FamilyMonooxygenase subunit B C-terminal domain-like8095937 4007812 SCOP2 (2022-06-29)
K [auth I]SCOP2 FamilyMonooxygenase subunit B copper-binding domain-like8046392 4005056 SCOP2 (2022-06-29)
K [auth I]SCOP2 SuperfamilyMonooxygenase subunit B transmembrane domain-like8095939 3002711 SCOP2 (2022-06-29)
K [auth I]SCOP2 SuperfamilyMonooxygenase subunit B C-terminal domain-like8095940 3002712 SCOP2 (2022-06-29)
K [auth I]SCOP2 SuperfamilyPapD-like8095938 3002067 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyGx transporter-like8095953 3002268 SCOP2B (2022-06-29)
G [auth F]SCOP2B SuperfamilyGx transporter-like8095953 3002268 SCOP2B (2022-06-29)
L [auth J]SCOP2 FamilyAmmonia monooxygenase-like8050419 4006879 SCOP2 (2022-06-29)
L [auth J]SCOP2 SuperfamilyGx transporter-like8095953 3002268 SCOP2 (2022-06-29)
CSCOP2 FamilyAmmonia monooxygenase/methane monooxygenase subunit C-like8046645 4005211 SCOP2 (2022-06-29)
CSCOP2 SuperfamilyAmmonia monooxygenase/methane monooxygenase subunit C-like8053447 3002188 SCOP2 (2022-06-29)
H [auth G]SCOP2B SuperfamilyAmmonia monooxygenase/methane monooxygenase subunit C-like8053447 3002188 SCOP2B (2022-06-29)
M [auth K]SCOP2B SuperfamilyAmmonia monooxygenase/methane monooxygenase subunit C-like8053447 3002188 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF04744e3chxA3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF04744ECOD (1.6)
APF04744e3chxA1 A: alpha bundlesX: Long alpha-hairpinH: PmoB helical hairpin (From Topology)T: PmoB helical hairpinF: PF04744ECOD (1.6)
F [auth E]PF04744e3chxE3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF04744ECOD (1.6)
F [auth E]PF04744e3chxE1 A: alpha bundlesX: Long alpha-hairpinH: PmoB helical hairpin (From Topology)T: PmoB helical hairpinF: PF04744ECOD (1.6)
K [auth I]PF04744e3chxI3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF04744ECOD (1.6)
K [auth I]PF04744e3chxI1 A: alpha bundlesX: Long alpha-hairpinH: PmoB helical hairpin (From Topology)T: PmoB helical hairpinF: PF04744ECOD (1.6)
BPF02461e3chxB1 A: alpha bundlesX: PmoA (From Topology)H: PmoA (From Topology)T: PmoAF: PF02461ECOD (1.6)
G [auth F]PF02461e3chxF1 A: alpha bundlesX: PmoA (From Topology)H: PmoA (From Topology)T: PmoAF: PF02461ECOD (1.6)
L [auth J]PF02461e3chxJ1 A: alpha bundlesX: PmoA (From Topology)H: PmoA (From Topology)T: PmoAF: PF02461ECOD (1.6)
CPF04896e3chxC1 A: alpha bundlesX: STAT-likeH: Ammonia monooxygenase subunit C (From Topology)T: Ammonia monooxygenase subunit CF: PF04896ECOD (1.6)
H [auth G]PF04896e3chxG2 A: alpha bundlesX: STAT-likeH: Ammonia monooxygenase subunit C (From Topology)T: Ammonia monooxygenase subunit CF: PF04896ECOD (1.6)
M [auth K]PF04896e3chxK2 A: alpha bundlesX: STAT-likeH: Ammonia monooxygenase subunit C (From Topology)T: Ammonia monooxygenase subunit CF: PF04896ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.120.570 Mainly Beta Sandwich Jelly Rolls Particulate methane monooxygenase, b subunit. Chain: A, domain 1CATH (4.3.0)
A1.10.287.710 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin binCATH (4.3.0)
A2.60.40.1580 Mainly Beta Sandwich Immunoglobulin-like Particulate methane monooxygenase, b subunit. Chain: A, domain 3CATH (4.3.0)
F [auth E]2.60.120.570 Mainly Beta Sandwich Jelly Rolls Particulate methane monooxygenase, b subunit. Chain: A, domain 1CATH (4.3.0)
F [auth E]1.10.287.710 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin binCATH (4.3.0)
F [auth E]2.60.40.1580 Mainly Beta Sandwich Immunoglobulin-like Particulate methane monooxygenase, b subunit. Chain: A, domain 3CATH (4.3.0)
K [auth I]2.60.120.570 Mainly Beta Sandwich Jelly Rolls Particulate methane monooxygenase, b subunit. Chain: A, domain 1CATH (4.3.0)
K [auth I]1.10.287.710 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin binCATH (4.3.0)
K [auth I]2.60.40.1580 Mainly Beta Sandwich Immunoglobulin-like Particulate methane monooxygenase, b subunit. Chain: A, domain 3CATH (4.3.0)
B1.20.1450.10 Mainly Alpha Up-down Bundle particulate methane monooxygenase, chain B Ammonia/particulate methane monooxygenase, subunit ACATH (4.3.0)
G [auth F]1.20.1450.10 Mainly Alpha Up-down Bundle particulate methane monooxygenase, chain B Ammonia/particulate methane monooxygenase, subunit ACATH (4.3.0)
L [auth J]1.20.1450.10 Mainly Alpha Up-down Bundle particulate methane monooxygenase, chain B Ammonia/particulate methane monooxygenase, subunit ACATH (4.3.0)
C1.20.1050.50 Mainly Alpha Up-down Bundle Glutathione S-transferase Yfyf (Class Pi) Chain A, domain 2CATH (4.3.0)
H [auth G]1.20.1050.50 Mainly Alpha Up-down Bundle Glutathione S-transferase Yfyf (Class Pi) Chain A, domain 2CATH (4.3.0)
M [auth K]1.20.1050.50 Mainly Alpha Up-down Bundle Glutathione S-transferase Yfyf (Class Pi) Chain A, domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
F [auth E],
K [auth I]		PF04744Monooxygenase subunit B protein (Monooxygenase_B)Monooxygenase subunit B protein- Family
B,
G [auth F],
L [auth J]		PF02461Ammonia monooxygenase (AMO)Ammonia monooxygenase- Family
C,
H [auth G],
M [auth K]		PF04896Ammonia monooxygenase/methane monooxygenase, subunit C (AmoC)Ammonia monooxygenase/methane monooxygenase, subunit C- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
F [auth E],
K [auth I]		PmoB- -
B,
G [auth F],
L [auth J]		PmoA- -
C,
H [auth G],
M [auth K]		PmoC- -
D,
I [auth H],
N [auth L]		20-residue peptide---
E [auth M],
J [auth N],
O		26-residue peptide---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
F [auth E],
K [auth I]		IPR006833Ammonia monooxygenase/particulate methane monooxygenase, subunit BFamily
A,
F [auth E],
K [auth I]		IPR023141Ammonia/methane monooxygenase, subunit B, hairpin domain superfamilyHomologous Superfamily
A,
F [auth E],
K [auth I]		IPR023303Ammonia/methane monooxygenase, subunit B, C-terminalHomologous Superfamily
A,
F [auth E],
K [auth I]		IPR023301Ammonia/methane monooxygenase, subunitB, N-terminalHomologous Superfamily
B,
G [auth F],
L [auth J]		IPR037001Ammonia/particulate methane monooxygenase, subunit A superfamilyHomologous Superfamily
B,
G [auth F],
L [auth J]		IPR003393Ammonia monooxygenase/particulate methane monooxygenase, subunit AFamily
C,
H [auth G],
M [auth K]		IPR006980Ammonia monooxygenase/particulate methane monooxygenase, subunit CFamily
C,
H [auth G],
M [auth K]		IPR023349Ammonia monooxygenase/particulate methane monooxygenase, subunit C domain superfamilyHomologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
OPMMethane monooxygenase

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
MemProtMDAnnotated as membrane protein by MemProtMD