3CH4 | pdb_00003ch4

The Crystal Structure of Human Phosphomavelonate Kinase At 1.8 A Resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth B]	SCOP2 Family	Phosphomevalonate kinase-like	8045667	4004604	SCOP2 (2022-06-29)
A [auth B]	SCOP2 Superfamily	P-loop nucleotide/nucleoside kinase-like	8091380	3002021	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]		e3ch4B1	A: Profilin-like	X: sensor domains	H: sensor domains	T: Hormone_recep	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth B]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B]	PF04275	Phosphomevalonate kinase (P-mevalo_kinase)	Phosphomevalonate kinase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B]	Phosphomevalonate kinase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding kinase activity phosphomevalonate kinase activity transferase activity catalytic activity phosphotransferase activity, phosphate group as acceptor transferase activity, transferring phosphorus-containing groups	response to sterol response to stimulus response to lipid response to alcohol response to chemical response to oxygen-containing compound response to cholesterol sterol biosynthetic process biosynthetic process steroid metabolic process sterol metabolic process lipid biosynthetic process primary metabolic process metabolic process response to sterol response to stimulus response to lipid response to alcohol response to chemical response to oxygen-containing compound response to cholesterol sterol biosynthetic process biosynthetic process steroid metabolic process sterol metabolic process lipid biosynthetic process primary metabolic process metabolic process cellular process steroid biosynthetic process lipid metabolic process isopentenyl diphosphate biosynthetic process acetyl-CoA metabolic process phospholipid metabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process small molecule metabolic process phosphorus metabolic process nucleoside phosphate metabolic process isoprenoid biosynthetic process phospholipid biosynthetic process purine-containing compound metabolic process organophosphate metabolic process organophosphate biosynthetic process isopentenyl diphosphate biosynthetic process, mevalonate pathway isoprenoid metabolic process isopentenyl diphosphate metabolic process secondary alcohol biosynthetic process small molecule biosynthetic process cholesterol biosynthetic process cholesterol metabolic process alcohol metabolic process secondary alcohol metabolic process alcohol biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular organelle peroxisome microbody intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B]	IPR005919	Higher eukaryotic phosphomevalonate kinase	Family
A [auth B]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth B]	Pharos: Q15126	porokeratosis of Mibelli porokeratosis 1, Mibelli type atrial fibrillation inflammatory bowel disease ovarian cancer plasma cell myeloma breast carcinoma large cell medulloblastoma ovarian carcinoma porokeratosis prostate carcinoma cutaneous melanoma malignant mesothelioma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia skin basal cell carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.