3CAW | pdb_00003caw

Crystal structure of o-succinylbenzoate synthase from Bdellovibrio bacteriovorus liganded with Mg

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Me-amine-dh_H	e3cawB2	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Me-amine-dh_H	ECOD (v294.1)
B	HSCB_C	e3cawB1	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: HSCB_C	ECOD (v294.1)
A	HSCB_C	e3cawA1	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: HSCB_C	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
B	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.3.0)
A	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
A	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF22015	O-succinylbenzoate synthase, N-terminal domain (OSBS_N)	O-succinylbenzoate synthase, N-terminal domain	This domain is found N-terminal in members of o-succinylbenzoate synthase (OSBS) family. It is also known as capping domain. In most members, this domain consists of a central three-stranded antiparallel beta-sheet packed on one side with two helices ...	This domain is found N-terminal in members of o-succinylbenzoate synthase (OSBS) family. It is also known as capping domain. In most members, this domain consists of a central three-stranded antiparallel beta-sheet packed on one side with two helices. The second helix is truncated or missing in some members of the family [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	o-succinylbenzoate synthase	cation binding ion binding binding metal ion binding small molecule binding hydro-lyase activity lyase activity catalytic activity O-succinylbenzoate synthase activity carbon-oxygen lyase activity	vitamin K metabolic process small molecule biosynthetic process ketone metabolic process vitamin biosynthetic process vitamin metabolic process biosynthetic process phylloquinone biosynthetic process vitamin K biosynthetic process fat-soluble vitamin biosynthetic process metabolic process cellular process small molecule metabolic process ketone biosynthetic process menaquinone metabolic process vitamin K metabolic process small molecule biosynthetic process ketone metabolic process vitamin biosynthetic process vitamin metabolic process biosynthetic process phylloquinone biosynthetic process vitamin K biosynthetic process fat-soluble vitamin biosynthetic process metabolic process cellular process small molecule metabolic process ketone biosynthetic process menaquinone metabolic process menaquinone biosynthetic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR041338	OSBS, enolase-like N-terminal domain	Domain
A, B	IPR029017	Enolase-like, N-terminal	Homologous Superfamily
A, B	IPR036849	Enolase-like, C-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.