3C5Q | pdb_00003c5q

Crystal structure of diaminopimelate decarboxylase (I148L mutant) from Helicobacter pylori complexed with L-lysine

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AV-sete3c5qA3 A: a/b three-layered sandwichesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.40.37.10 Mainly Beta Beta Barrel Lyase, Ornithine Decarboxylase Chain A, domain 1CATH (4.3.0)
A3.20.20.10 Alpha Beta Alpha-Beta Barrel TIM Barrel Alanine racemaseCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Diaminopimelate decarboxylase - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR029066PLP-binding barrelHomologous Superfamily
IPR022643Orn/DAP/Arg decarboxylase 2, C-terminalDomain
IPR009006Alanine racemase/group IV decarboxylase, C-terminalHomologous Superfamily
IPR000183Ornithine/DAP/Arg decarboxylaseFamily
IPR022644Orn/DAP/Arg decarboxylase 2, N-terminalDomain
IPR002986Diaminopimelate decarboxylase, LysAFamily
IPR022653Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding siteBinding Site