3C2U | pdb_00003c2u

Structure of the two subsite D-xylosidase from Selenomonas ruminantium in complex with 1,3-bis[tris(hydroxymethyl)methylamino]propane

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d3c2ud2	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	automated matches	automated matches	(Selenomonas ruminantium ) [TaxId: 971 ],	SCOPe (2.08)
D	d3c2ud1	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	automated matches	automated matches	(Selenomonas ruminantium ) [TaxId: 971 ],	SCOPe (2.08)
C	d3c2uc2	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	automated matches	automated matches	(Selenomonas ruminantium ) [TaxId: 971 ],	SCOPe (2.08)
C	d3c2uc1	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	automated matches	automated matches	(Selenomonas ruminantium ) [TaxId: 971 ],	SCOPe (2.08)
B	d3c2ub2	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	automated matches	automated matches	(Selenomonas ruminantium ) [TaxId: 971 ],	SCOPe (2.08)
B	d3c2ub1	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	automated matches	automated matches	(Selenomonas ruminantium ) [TaxId: 971 ],	SCOPe (2.08)
A	d3c2ua2	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	automated matches	automated matches	(Selenomonas ruminantium ) [TaxId: 971 ],	SCOPe (2.08)
A	d3c2ua1	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	automated matches	automated matches	(Selenomonas ruminantium ) [TaxId: 971 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	DUF1349_1	e3c2uD4	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: DUF1349_1	ECOD (1.6)
D	Glyco_hydro_43	e3c2uD3	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 5-bladed	F: Glyco_hydro_43	ECOD (1.6)
C	DUF1349_1	e3c2uC4	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: DUF1349_1	ECOD (1.6)
C	Glyco_hydro_43	e3c2uC3	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 5-bladed	F: Glyco_hydro_43	ECOD (1.6)
B	DUF1349_1	e3c2uB4	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: DUF1349_1	ECOD (1.6)
B	Glyco_hydro_43	e3c2uB3	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 5-bladed	F: Glyco_hydro_43	ECOD (1.6)
A	DUF1349_1	e3c2uA4	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: DUF1349_1	ECOD (1.6)
A	Glyco_hydro_43	e3c2uA3	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 5-bladed	F: Glyco_hydro_43	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
D	2.60.120.200	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
C	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
C	2.60.120.200	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
B	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
B	2.60.120.200	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
A	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
A	2.60.120.200	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Xylosidase/arabinosidase	hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A, B, C, D	IPR023296	Glycosyl hydrolase, five-bladed beta-propeller domain superfamily	Homologous Superfamily
A, B, C, D	IPR006710	Glycoside hydrolase, family 43	Family
A, B, C, D	IPR041542	Beta-xylosidase, C-terminal Concanavalin A-like domain	Domain
A, B, C, D	IPR051795	Glycosyl Hydrolase Family 43	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.