3AQO
Structure and function of a membrane component SecDF that enhances protein export
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | secD | e3aqoA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: secD | ECOD (1.6) |
B | secD | e3aqoB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: secD | ECOD (1.6) |
C | secD | e3aqoC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: secD | ECOD (1.6) |
C | secD_1 | e3aqoC2 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin domains in multidrug efflux transporter | T: Multidrug efflux transporter AcrB pore domain | F: secD_1 | ECOD (1.6) |
D | secD | e3aqoD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: secD | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.3400 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
A | 3.30.1360.200 | Alpha Beta | 2-Layer Sandwich | Gyrase A | domain 2 | CATH (4.3.0) |
B | 3.30.70.3400 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
B | 3.30.1360.200 | Alpha Beta | 2-Layer Sandwich | Gyrase A | domain 2 | CATH (4.3.0) |
C | 3.30.70.3400 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
C | 3.30.1360.200 | Alpha Beta | 2-Layer Sandwich | Gyrase A | domain 2 | CATH (4.3.0) |
D | 3.30.70.3400 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
D | 3.30.1360.200 | Alpha Beta | 2-Layer Sandwich | Gyrase A | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21760 | Protein translocase subunit SecDF, P1 domain, N-terminal (SecD_1st) | Protein translocase subunit SecDF, P1 domain, N-terminal | This domain is found in Protein translocase subunit SecDF from Thermus thermophilus, which belongs to the RND superfamily. SecDF shows 12 transmembrane (TM) regions and 6 periplasmic regions (P1-P6). This entry represents the N-terminal region of the ... | Domain | |
PF02355 | Protein export membrane protein (SecD_SecF) | Protein export membrane protein | - | Family | |
PF07549 | SecD/SecF GG Motif (Sec_GG) | SecD/SecF GG Motif | - | Motif |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Sec, Translocase, and Insertase Proteins | SecDF protein-export enhancer |