3AGA | pdb_00003aga

Crystal structure of RCC-bound red chlorophyll catabolite reductase from Arabidopsis thaliana

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Coproporphyrinogen III oxidase	8106400	3001418	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Coproporphyrinogen III oxidase	8106400	3001418	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	SdrG_C_C	e3agaB1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SdrG_C_C	ECOD (v294.1)
A	CBM_48	e3agaA1	A: a/b three-layered sandwiches	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain	T: PTS-regulatory domain, PRD	F: CBM_48	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.1500.20	Alpha Beta	3-Layer(aba) Sandwich	oxygen-dependent coproporphyrinogen oxidase		CATH (4.3.0)
A	3.40.1500.20	Alpha Beta	3-Layer(aba) Sandwich	oxygen-dependent coproporphyrinogen oxidase		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF06405	Red chlorophyll catabolite reductase (RCC reductase) (RCC_reductase)	Red chlorophyll catabolite reductase (RCC reductase)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Red chlorophyll catabolite reductase, chloroplastic	oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor oxidoreductase activity red chlorophyll catabolite reductase activity oxidoreductase activity, acting on the CH-CH group of donors catalytic activity	cellular response to stimulus regulation of plant-type hypersensitive response regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process response to stimulus regulation of response to external stimulus regulation of cellular response to stress regulation of programmed cell death response to biotic stimulus symbiont-induced defense-related programmed cell death cellular response to stress response to stress regulation of response to stress cellular response to stimulus regulation of plant-type hypersensitive response regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process response to stimulus regulation of response to external stimulus regulation of cellular response to stress regulation of programmed cell death response to biotic stimulus symbiont-induced defense-related programmed cell death cellular response to stress response to stress regulation of response to stress plant-type hypersensitive response innate immune response regulation of immune system process response to external biotic stimulus regulation of biological process immune response response to other organism defense response regulation of innate immune response biological regulation defense response to symbiont response to external stimulus cell death regulation of response to stimulus immune system process defense response to other organism regulation of immune response cellular process programmed cell death pigment catabolic process pigment metabolic process catabolic process tetrapyrrole metabolic process chlorophyll metabolic process porphyrin-containing compound catabolic process metabolic process porphyrin-containing compound metabolic process chlorophyll catabolic process tetrapyrrole catabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle chloroplast thylakoid membrane plastid membrane plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle chloroplast thylakoid membrane plastid membrane plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid organelle envelope bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle thylakoid membrane chloroplast thylakoid outer membrane photosynthetic membrane organelle membrane plastid stroma chloroplast stroma cytosol cell periphery plasma membrane chloroplast envelope

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR009439	Red chlorophyll catabolite reductase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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