Annotations: 3A4C

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Cdt1 C-terminal domain-like	8045977	4004797	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Winged helix DNA-binding domain	8092511	3000034	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	HTH_20	e3a4cA2	A: alpha bundles	X: Fusion glycoprotein F2	H: HTH	T: winged helix domain	F: HTH_20	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.10.1420	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	DNA replication factor Cdt1, C-terminal WH domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF16679	DNA replication factor Cdt1 C-terminal domain (CDT1_C)	DNA replication factor Cdt1 C-terminal domain	This is the C-terminal domain of DNA replication factor Cdt1. This domain binds the MCM complex [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	DNA replication factor Cdt1	DNA binding binding nucleic acid binding chromatin binding protein binding DNA polymerase binding enzyme binding	DNA-templated DNA replication protein-containing complex organization DNA replication preinitiation complex assembly nuclear DNA replication cell cycle DNA replication primary metabolic process protein-DNA complex assembly DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component organization cellular component biogenesis protein-DNA complex organization DNA replication cellular component assembly DNA-templated DNA replication protein-containing complex organization DNA replication preinitiation complex assembly nuclear DNA replication cell cycle DNA replication primary metabolic process protein-DNA complex assembly DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component organization cellular component biogenesis protein-DNA complex organization DNA replication cellular component assembly protein-containing complex assembly metabolic process cellular process macromolecule metabolic process cell cycle cellular component organization or biogenesis cell cycle process mitotic cell cycle regulation of cellular process regulation of primary metabolic process regulation of nucleobase-containing compound metabolic process regulation of cell cycle regulation of biological process regulation of nuclear cell cycle DNA replication regulation of cell cycle process biological regulation regulation of macromolecule metabolic process regulation of DNA-templated DNA replication regulation of metabolic process regulation of DNA replication regulation of DNA metabolic process cellular response to stimulus regulation of cell cycle phase transition response to stimulus signaling negative regulation of biological process negative regulation of cell cycle cell cycle phase transition intracellular signal transduction cell communication negative regulation of cellular process negative regulation of cell cycle phase transition signal transduction DNA replication checkpoint signaling DNA integrity checkpoint signaling negative regulation of cell cycle process cell cycle checkpoint signaling mitotic metaphase chromosome alignment metaphase chromosome alignment localization chromosome localization organelle localization mitotic sister chromatid segregation chromosome segregation mitotic nuclear division attachment of spindle microtubules to kinetochore organelle fission attachment of mitotic spindle microtubules to kinetochore chromosome organization sister chromatid segregation organelle organization nuclear division mitotic cell cycle process nuclear chromosome segregation positive regulation of DNA replication positive regulation of biological process positive regulation of metabolic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of DNA metabolic process negative regulation of DNA-templated DNA replication negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA replication negative regulation of metabolic process negative regulation of DNA metabolic process response to carbohydrate response to chemical response to sorbitol response to oxygen-containing compound positive regulation of DNA-templated DNA replication regulation of DNA-templated DNA replication initiation DNA replication initiation	intracellular anatomical structure intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle cellular anatomical structure organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome membrane-bounded organelle intracellular anatomical structure intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle cellular anatomical structure organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear body nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR038090	DNA replication factor Cdt1, C-terminal WH domain superfamily	Homologous Superfamily
A	IPR014939	CDT1 Geminin-binding domain-like	Domain
A	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A	IPR032054	DNA replication factor Cdt1, C-terminal	Domain
A	IPR045173	DNA replication factor Cdt1	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.