3A0O

Crystal structure of alginate lyase from Agrobacterium tumefaciens C58

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Heparinase II/III-like	8050266	4006819	SCOP2 (2022-06-29)
A	SCOP2 Family	Atu3025 N-terminal domain-like	8090367	4007703	SCOP2 (2022-06-29)
A	SCOP2 Family	HepB N-terminal domain-like	8045378	4004446	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Galactose mutarotase-like	8090366	3000035	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	E set domains	8090368	3000070	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Chondroitin AC/alginate lyase	8090365	3001005	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	E set domains	8090368	3000070	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Galactose mutarotase-like	8090366	3000035	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Chondroitin AC/alginate lyase	8090365	3001005	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	fn3_7	e3a0oA9	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: fn3_7	ECOD (1.6)
A	Hepar_II_III	e3a0oA7	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: supersandwich (From Topology)	T: supersandwich	F: Hepar_II_III	ECOD (1.6)
A	Alginate_lyase_1	e3a0oA8	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: Alginate_lyase_1	ECOD (1.6)
B	fn3_7	e3a0oB9	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: fn3_7	ECOD (1.6)
B	Hepar_II_III	e3a0oB7	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: supersandwich (From Topology)	T: supersandwich	F: Hepar_II_III	ECOD (1.6)
B	Alginate_lyase_1	e3a0oB8	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: Alginate_lyase_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A	1.50.10.100	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase	Chondroitin AC/alginate lyase	CATH (4.3.0)
A	2.70.98.70	Mainly Beta	Distorted Sandwich	Beta-galactosidase	Chain A, domain 5	CATH (4.3.0)
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
B	1.50.10.100	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase	Chondroitin AC/alginate lyase	CATH (4.3.0)
B	2.70.98.70	Mainly Beta	Distorted Sandwich	Beta-galactosidase	Chain A, domain 5	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF16332	Domain of unknown function (DUF4962) (DUF4962)	Domain of unknown function (DUF4962)	-	Repeat
A, B	PF07940	Heparinase II/III-like protein (Hepar_II_III)	Heparinase II/III-like protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Oligo alginate lyase	lyase activity catalytic activity	-	membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR032518	Heparinase II, N-terminal	Domain
A, B	IPR012364	Oligosaccharide lyase	Family
A, B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B	IPR008929	Chondroitin AC/alginate lyase	Homologous Superfamily
A, B	IPR012480	Heparinase II/III-like	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.