30QZ | pdb_000030qz

E. coli 50S ribosome with peptidyl-tRNA and Hsp15


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth i]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
G [auth g]SCOP2B SuperfamilyRibosomal protein L6 8035398 3000724 SCOP2B (2022-06-29)
G [auth g]SCOP2B SuperfamilyRibosomal protein L6 8035397 3000724 SCOP2B (2022-06-29)
F [auth f]SCOP2B SuperfamilyRL5-like 8096352 3001709 SCOP2B (2022-06-29)
E [auth e]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
D [auth d]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
FA [auth V]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8035741 3001473 SCOP2B (2022-06-29)
DA [auth 3]SCOP2B SuperfamilyRibosomal protein L36 8035391 3001346 SCOP2B (2022-06-29)
C [auth c]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8035393 3000334 SCOP2B (2022-06-29)
C [auth c]SCOP2B SuperfamilyNucleic acid-binding proteins 8035394 3000135 SCOP2B (2022-06-29)
CA [auth 2]SCOP2B SuperfamilyL35p-like 8035388 3000790 SCOP2B (2022-06-29)
AA [auth 0]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096362 3001320 SCOP2B (2022-06-29)
Z [auth z]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)
Y [auth y]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
X [auth x]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
W [auth w]SCOP2B SuperfamilyL28p-like 8035424 3001966 SCOP2B (2022-06-29)
V [auth v]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
U [auth u]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
T [auth t]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
S [auth s]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
R [auth r]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
Q [auth q]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
P [auth p]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
O [auth o]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
N [auth n]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
M [auth m]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
L [auth l]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8096366 3000884 SCOP2B (2022-06-29)
K [auth k]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
J [auth j]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
GA [auth Z]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
FA [auth V]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
EA [auth 6]PF02410Ribosomal silencing factor during starvation (RsfS)Ribosomal silencing factor during starvationThis family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal su ...This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal subunit, thus acting as a ribosomal silencing factor (RsfS) by blocking the joining of the ribosomal subunits [1]. This family is structurally homologous to nucleotidyltransferases.
Domain
DA [auth 3]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
CA [auth 2]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
BA [auth 1]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
AA [auth 0]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth i]Large ribosomal subunit protein uL13
H [auth h]Large ribosomal subunit protein bL9
G [auth g]Large ribosomal subunit protein uL6
F [auth f]Large ribosomal subunit protein uL5
E [auth e]Large ribosomal subunit protein uL4
D [auth d]Large ribosomal subunit protein uL3
GA [auth Z]tRNA Asp---
FA [auth V]Heat shock protein 15
EA [auth 6]Ribosomal silencing factor RsfS
DA [auth 3]Large ribosomal subunit protein bL36A
C [auth c]Large ribosomal subunit protein uL2
CA [auth 2]Large ribosomal subunit protein bL35
BA [auth 1]Large ribosomal subunit protein bL34
AA [auth 0]Large ribosomal subunit protein bL33
Z [auth z]Large ribosomal subunit protein bL32
Y [auth y]Large ribosomal subunit protein uL30
X [auth x]Large ribosomal subunit protein uL29
W [auth w]Large ribosomal subunit protein bL28
V [auth v]Large ribosomal subunit protein bL27
U [auth u]Large ribosomal subunit protein bL25
T [auth t]Large ribosomal subunit protein uL24
B [auth b]5S rRNA---
S [auth s]Large ribosomal subunit protein uL23
R [auth r]Large ribosomal subunit protein uL22
Q [auth q]Large ribosomal subunit protein bL21
P [auth p]Large ribosomal subunit protein bL20
O [auth o]Large ribosomal subunit protein bL19
N [auth n]Large ribosomal subunit protein uL18
M [auth m]Large ribosomal subunit protein bL17
L [auth l]Large ribosomal subunit protein uL16
K [auth k]Large ribosomal subunit protein uL15
J [auth j]Large ribosomal subunit protein uL14
A [auth a]23S rRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth i]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
I [auth i]IPR005822Large ribosomal subunit protein uL13Family
I [auth i]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
I [auth i]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
H [auth h]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
H [auth h]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
H [auth h]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
H [auth h]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
H [auth h]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
H [auth h]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
H [auth h]IPR000244Large ribosomal subunit protein bL9Family
G [auth g]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
G [auth g]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
G [auth g]IPR000702Large ribosomal subunit protein uL6-likeFamily
G [auth g]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
G [auth g]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
F [auth f]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
F [auth f]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
F [auth f]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
F [auth f]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
F [auth f]IPR002132Large ribosomal subunit protein uL5Family
F [auth f]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
E [auth e]IPR013005Large ribosomal subunit protein uL4-likeFamily
E [auth e]IPR002136Large ribosomal subunit protein uL4Family
E [auth e]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
D [auth d]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
D [auth d]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
D [auth d]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
D [auth d]IPR000597Large ribosomal subunit protein uL3Family
FA [auth V]IPR002942RNA-binding S4 domainDomain
FA [auth V]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
FA [auth V]IPR025708Heat shock protein 15Family
EA [auth 6]IPR043519Nucleotidyltransferase superfamilyHomologous Superfamily
EA [auth 6]IPR004394Protein Iojap/ribosomal silencing factor RsfSFamily
DA [auth 3]IPR000473Large ribosomal subunit protein bL36Family
DA [auth 3]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
C [auth c]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
C [auth c]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
C [auth c]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
C [auth c]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
C [auth c]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
C [auth c]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth c]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
C [auth c]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
C [auth c]IPR002171Large ribosomal subunit protein uL2Family
CA [auth 2]IPR021137Large ribosomal subunit protein bL35-likeFamily
CA [auth 2]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
CA [auth 2]IPR001706Large ribosomal subunit protein bL35Family
CA [auth 2]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
BA [auth 1]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
BA [auth 1]IPR000271Large ribosomal subunit protein bL34Family
AA [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AA [auth 0]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
AA [auth 0]IPR001705Large ribosomal subunit protein bL33Family
AA [auth 0]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
Z [auth z]IPR002677Large ribosomal subunit protein bL32Family
Z [auth z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Z [auth z]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
Y [auth y]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
Y [auth y]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
Y [auth y]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
Y [auth y]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
X [auth x]IPR050063Universal ribosomal protein uL29Family
X [auth x]IPR001854Large ribosomal subunit protein uL29Family
X [auth x]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
X [auth x]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
W [auth w]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
W [auth w]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
W [auth w]IPR026569Large ribosomal subunit protein bL28Family
W [auth w]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
V [auth v]IPR001684Large ribosomal subunit protein bL27Family
V [auth v]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
U [auth u]IPR020055Ribosomal protein bL25, short-formFamily
U [auth u]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
U [auth u]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
U [auth u]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
U [auth u]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
T [auth t]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
T [auth t]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
T [auth t]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
T [auth t]IPR003256Large ribosomal subunit protein uL24Family
T [auth t]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
T [auth t]IPR005824KOWDomain
T [auth t]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
S [auth s]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
S [auth s]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
S [auth s]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
S [auth s]IPR013025Large ribosomal subunit protein uL23-likeFamily
R [auth r]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
R [auth r]IPR001063Large ribosomal subunit protein uL22Family
R [auth r]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
R [auth r]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
R [auth r]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
Q [auth q]IPR028909Large ribosomal subunit protein bL21-likeFamily
Q [auth q]IPR001787Large ribosomal subunit protein bL21Family
Q [auth q]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
Q [auth q]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
P [auth p]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
P [auth p]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
P [auth p]IPR005813Large ribosomal subunit protein bL20Family
O [auth o]IPR001857Large ribosomal subunit protein bL19Family
O [auth o]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
O [auth o]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
O [auth o]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
N [auth n]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
N [auth n]IPR057268Large ribosomal subunit protein uL18Family
N [auth n]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
M [auth m]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
M [auth m]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
M [auth m]IPR000456Large ribosomal subunit protein bL17Family
L [auth l]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
L [auth l]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
L [auth l]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
L [auth l]IPR016180Large ribosomal subunit protein uL16 domainDomain
L [auth l]IPR047873Large ribosomal subunit protein uL16Family
K [auth k]IPR021131Large ribosomal subunit protein uL15/eL18Domain
K [auth k]IPR030878Large ribosomal subunit protein uL15Family
K [auth k]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
K [auth k]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
K [auth k]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
J [auth j]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
J [auth j]IPR000218Large ribosomal subunit protein uL14Family
J [auth j]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
J [auth j]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
D [auth d]MEQ Parent Component: GLN

AA0071

:  N5-methyl-L-glutamine MOD:00080
L [auth l]4D4 Parent Component: ARG

AA0071

L [auth l]MS6 Parent Component: MET

A [auth a]1MG Parent Component: G

AA0071

A [auth a]2MA Parent Component: A

AA0071

A [auth a]2MG Parent Component: G

AA0071

A [auth a]3TD Parent Component: U

AA0071

A [auth a]5MC Parent Component: C

AA0071

A [auth a]5MU Parent Component: U

AA0071

A [auth a]6MZ Parent Component: A

AA0071

A [auth a]G7M Parent Component: G

AA0071

A [auth a]H2U Parent Component: U

AA0071

A [auth a]OMC Parent Component: C

AA0071

A [auth a]OMG Parent Component: G

AA0071

A [auth a]OMU Parent Component: U

AA0071

A [auth a]PSU Parent Component: U

AA0071