Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ABig_2e2zwkA1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Big_2ECOD (1.6)
AIntimin_Ce2zwkA2 A: a+b complex topologyX: C-type lectin-like (From Homology)H: C-type lectin-likeT: C-type lectin-likeF: Intimin_CECOD (1.6)
CBig_2e2zwkC1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Big_2ECOD (1.6)
CIntimin_Ce2zwkC2 A: a+b complex topologyX: C-type lectin-like (From Homology)H: C-type lectin-likeT: C-type lectin-likeF: Intimin_CECOD (1.6)
EBig_2e2zwkE1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Big_2ECOD (1.6)
EIntimin_Ce2zwkE2 A: a+b complex topologyX: C-type lectin-like (From Homology)H: C-type lectin-likeT: C-type lectin-likeF: Intimin_CECOD (1.6)
BTir_receptor_Me2zwkB1 A: alpha duplicates or obligate multimersX: Translocated intimin receptor Tir extracellular domain (From Topology)H: Translocated intimin receptor Tir extracellular domain (From Topology)T: Translocated intimin receptor Tir extracellular domainF: Tir_receptor_MECOD (1.6)
DTir_receptor_Me2zwkD1 A: alpha duplicates or obligate multimersX: Translocated intimin receptor Tir extracellular domain (From Topology)H: Translocated intimin receptor Tir extracellular domain (From Topology)T: Translocated intimin receptor Tir extracellular domainF: Tir_receptor_MECOD (1.6)
FTir_receptor_Me2zwkF1 A: alpha duplicates or obligate multimersX: Translocated intimin receptor Tir extracellular domain (From Topology)H: Translocated intimin receptor Tir extracellular domain (From Topology)T: Translocated intimin receptor Tir extracellular domainF: Tir_receptor_MECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.40.1080 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
A3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
C2.60.40.1080 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
C3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
E2.60.40.1080 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
E3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
B4.10.820.10 Few Secondary Structures Irregular Translocated Intimin Receptor Chain TCATH (4.3.0)
D4.10.820.10 Few Secondary Structures Irregular Translocated Intimin Receptor Chain TCATH (4.3.0)
F4.10.820.10 Few Secondary Structures Irregular Translocated Intimin Receptor Chain TCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C, E
PF07979Intimin C-type lectin domain (Intimin_C)Intimin C-type lectin domainThis domain is found at the C-terminus of intimin. Its structure has been solved and shown to have a C-lectin type of structure [1]. Intimin is a bacterial adhesion molecule involved in intimate attachment of enteropathogenic and enterohemorrhagic Es ...This domain is found at the C-terminus of intimin. Its structure has been solved and shown to have a C-lectin type of structure [1]. Intimin is a bacterial adhesion molecule involved in intimate attachment of enteropathogenic and enterohemorrhagic Escherichia coli to mammalian host cells. Intimin targets the translocated intimin receptor (Tir), which is exported by the bacteria and integrated into the host cell plasma membrane.
Domain
A, C, E
PF02368Bacterial Ig-like domain (group 2) (Big_2)Bacterial Ig-like domain (group 2)This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.Domain
B, D, F
PF03549Translocated intimin receptor (Tir) intimin-binding domain (Tir_receptor_M)Translocated intimin receptor (Tir) intimin-binding domainIntimin and its translocated intimin receptor (Tir) are bacterial proteins that mediate adhesion between mammalian cells and attaching and effacing (A/E) pathogens. A unique and essential feature of A/E bacterial pathogens is the formation of actin-r ...Intimin and its translocated intimin receptor (Tir) are bacterial proteins that mediate adhesion between mammalian cells and attaching and effacing (A/E) pathogens. A unique and essential feature of A/E bacterial pathogens is the formation of actin-rich pedestals beneath the intimately adherent bacteria and localised destruction of the intestinal brush border. The bacterial outer membrane adhesin, intimin, is necessary for the production of the A/E lesion and diarrhoea. The A/E bacteria translocate their own receptor for intimin, Tir, into the membrane of mammalian cells using the type III secretion system. The translocated Tir triggers additional host signalling events and actin nucleation, which are essential for lesion formation [1]. This family represents the Tir intimin-binding domain (Tir IBD) which is needed to bind intimin and support the predicted topology for Tir, with both N- and C-terminal regions in the mammalian cell cytosol [2].
Domain
B, D, F
PF07489Translocated intimin receptor (Tir) C-terminus (Tir_receptor_C)Translocated intimin receptor (Tir) C-terminusIntimin and its translocated intimin receptor (Tir) are bacterial proteins that mediate adhesion between mammalian cells and attaching and effacing (A/E) pathogens. A unique and essential feature of A/E bacterial pathogens is the formation of actin-r ...Intimin and its translocated intimin receptor (Tir) are bacterial proteins that mediate adhesion between mammalian cells and attaching and effacing (A/E) pathogens. A unique and essential feature of A/E bacterial pathogens is the formation of actin-rich pedestals beneath the intimately adherent bacteria and localised destruction of the intestinal brush border. The bacterial outer membrane adhesin, intimin, is necessary for the production of the A/E lesion and diarrhoea. The A/E bacteria translocate their own receptor for intimin, Tir, into the membrane of mammalian cells using the type III secretion system. The translocated Tir triggers additional host signalling events and actin nucleation, which are essential for lesion formation [1]. This family represents the Tir C-terminal domain which has been reported to bind uninfected host cells and beta-1 integrins although the role of intimin binding to integrins is unclear. This intimin C-terminal domain has also been shown to be sufficient for Tir recognition [2].
Domain