2ZAG | pdb_00002zag

Crystal structure of the SeMet-substituted soluble domain of STT3 from P. furiosus

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	TIL	e2zagD2	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Fibronectin type I module-like	T: Fibronectin type I module	F: TIL	ECOD (v294.1)
D	MoCoBD_2	e2zagD5	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Hemagglutinin HA2 chain	T: Hemagglutinin HA2 chain	F: MoCoBD_2	ECOD (v294.1)
C		e2zagC1	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: Thioredoxin-like	T: Thioredoxin-like	F:	ECOD (v294.1)
B	SOS1_NGEF_PH	e2zagB7	A: a/b three-layered sandwiches	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: SOS1_NGEF_PH	ECOD (v294.1)
B	tRNA-synt_1_2	e2zagB2	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: RIFT-related	T: acid protease	F: tRNA-synt_1_2	ECOD (v294.1)
B	MoCoBD_2	e2zagB3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Hemagglutinin HA2 chain	T: Hemagglutinin HA2 chain	F: MoCoBD_2	ECOD (v294.1)
A		e2zagA1	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: Thioredoxin-like	T: Thioredoxin-like	F:	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.12610	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
D	2.40.128.390	Mainly Beta	Beta Barrel	Lipocalin		CATH (4.3.0)
D	2.60.40.3020	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
D	2.60.40.3030	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
C	3.40.50.12610	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
C	2.40.128.390	Mainly Beta	Beta Barrel	Lipocalin		CATH (4.3.0)
C	2.60.40.3020	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
C	2.60.40.3030	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
B	3.40.50.12610	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
B	2.40.128.390	Mainly Beta	Beta Barrel	Lipocalin		CATH (4.3.0)
B	2.60.40.3020	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
B	2.60.40.3030	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A	3.40.50.12610	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
A	2.40.128.390	Mainly Beta	Beta Barrel	Lipocalin		CATH (4.3.0)
A	2.60.40.3020	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A	2.60.40.3030	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF21618	Oligosaccharyl transferase, Peripheral 1 domain (OST_P1)	Oligosaccharyl transferase, Peripheral 1 domain	This domain is found in Oligosaccharyl transferase from Pyrococcus furiosus (OST, also known as AglB-L) and similar archaeal sequences. OST catalyses the co-translational transfer of an oligosaccharide from a lipid donor to an asparagine residue in n ...	This domain is found in Oligosaccharyl transferase from Pyrococcus furiosus (OST, also known as AglB-L) and similar archaeal sequences. OST catalyses the co-translational transfer of an oligosaccharide from a lipid donor to an asparagine residue in nascent polypeptide chains. This protein is organised into four regions: a N-terminal half (Pfam:PF02516), the central core (CC) domain that includes the IS (insert) domain (Pfam:PF18246) and two peripheral domains, P1 (this entry) and P2 (Pfam:PF18235). This domain, which consists mainly of beta-strands, encircles the central core domain [1].	Domain
A, B, C, D	PF18235	Oligosaccharyltransferase Peripheral 2 domain (OST_P2)	Oligosaccharyltransferase Peripheral 2 domain	This is a domain found in the C-terminal region of STT3 present in P. furiosus. STT3 is an Oligosaccharyltransferase which catalyzes the transfer of a heptasaccharide, containing one hexouronate and two pentose residues, onto peptides in an Asn-X-Thr ...	This is a domain found in the C-terminal region of STT3 present in P. furiosus. STT3 is an Oligosaccharyltransferase which catalyzes the transfer of a heptasaccharide, containing one hexouronate and two pentose residues, onto peptides in an Asn-X-Thr/Ser-motif-dependent manner. This domain, known as the Peripheral 2 (P2) domain, encircles the central core domain [1].	Domain
A, B, C, D	PF18246	Oligosaccharyltransferase Insert domain (OST_IS)	Oligosaccharyltransferase Insert domain	This is a domain found in STT3 present in P. furiosus. In P. furiousus, STT3 is an Oligosaccharyltransferase which catalyzes the transfer of a heptasaccharide, containing one hexouronate and two pentose residues, onto peptides in an Asn-X-Thr/Ser-mot ...	This is a domain found in STT3 present in P. furiosus. In P. furiousus, STT3 is an Oligosaccharyltransferase which catalyzes the transfer of a heptasaccharide, containing one hexouronate and two pentose residues, onto peptides in an Asn-X-Thr/Ser-motif-dependent manner. This domain is inserted into the central core (CC) domain and hence is referred to as the Insert (IS) domain. This IS domain contains a disulphide bond [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Oligosaccharyl transferase stt3 subunit related protein	oligosaccharyl transferase activity glycosyltransferase activity transferase activity hexosyltransferase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR003674	Oligosaccharyl transferase, STT3 subunit	Family
A, B, C, D	IPR048307	Oligosaccharyl transferase STT3, N-terminal domain	Domain
A, B, C, D	IPR041152	Oligosaccharyltransferase, peripheral 2 domain	Domain
A, B, C, D	IPR048858	Oligosaccharyl transferase, peripheral 1 domain	Domain
A, B, C, D	IPR041530	Oligosaccharyltransferase insert domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.