2Z0L

Crystal structure of EBV-DNA polymerase accessory protein BMRF1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	DNA clamp	8103595	3000780	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	DNA clamp	8103596	3000780	SCOP2B (2022-06-29)
C	SCOP2 Family	Herpes DNA replication accessory factor-like	8046692	4005242	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	DNA clamp	8103595	3000780	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	DNA clamp	8103596	3000780	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	DNA clamp	8103595	3000780	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	DNA clamp	8103596	3000780	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	DNA clamp	8103595	3000780	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	DNA clamp	8103596	3000780	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	DNA clamp	8103595	3000780	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	DNA clamp	8103596	3000780	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	DNA clamp	8103596	3000780	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	DNA clamp	8103595	3000780	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	DNA clamp	8103596	3000780	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	DNA clamp	8103595	3000780	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	DNA clamp	8103596	3000780	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	DNA clamp	8103595	3000780	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Herpes_DNAp_acc_2nd	e2z0lA2	A: a+b two layers	X: DNA clamp (From Topology)	H: DNA clamp (From Topology)	T: DNA clamp	F: Herpes_DNAp_acc_2nd	ECOD (1.6)
A	Herpes_DNAp_acc_1st	e2z0lA1	A: a+b two layers	X: DNA clamp (From Topology)	H: DNA clamp (From Topology)	T: DNA clamp	F: Herpes_DNAp_acc_1st	ECOD (1.6)
C	Herpes_DNAp_acc_2nd	e2z0lC2	A: a+b two layers	X: DNA clamp (From Topology)	H: DNA clamp (From Topology)	T: DNA clamp	F: Herpes_DNAp_acc_2nd	ECOD (1.6)
C	Herpes_DNAp_acc_1st	e2z0lC1	A: a+b two layers	X: DNA clamp (From Topology)	H: DNA clamp (From Topology)	T: DNA clamp	F: Herpes_DNAp_acc_1st	ECOD (1.6)
D	Herpes_DNAp_acc_2nd	e2z0lD2	A: a+b two layers	X: DNA clamp (From Topology)	H: DNA clamp (From Topology)	T: DNA clamp	F: Herpes_DNAp_acc_2nd	ECOD (1.6)
D	Herpes_DNAp_acc_1st	e2z0lD1	A: a+b two layers	X: DNA clamp (From Topology)	H: DNA clamp (From Topology)	T: DNA clamp	F: Herpes_DNAp_acc_1st	ECOD (1.6)
E	Herpes_DNAp_acc_2nd	e2z0lE2	A: a+b two layers	X: DNA clamp (From Topology)	H: DNA clamp (From Topology)	T: DNA clamp	F: Herpes_DNAp_acc_2nd	ECOD (1.6)
E	Herpes_DNAp_acc_1st	e2z0lE1	A: a+b two layers	X: DNA clamp (From Topology)	H: DNA clamp (From Topology)	T: DNA clamp	F: Herpes_DNAp_acc_1st	ECOD (1.6)
F	Herpes_DNAp_acc_2nd	e2z0lF2	A: a+b two layers	X: DNA clamp (From Topology)	H: DNA clamp (From Topology)	T: DNA clamp	F: Herpes_DNAp_acc_2nd	ECOD (1.6)
F	Herpes_DNAp_acc_1st	e2z0lF1	A: a+b two layers	X: DNA clamp (From Topology)	H: DNA clamp (From Topology)	T: DNA clamp	F: Herpes_DNAp_acc_1st	ECOD (1.6)
G	Herpes_DNAp_acc_2nd	e2z0lG2	A: a+b two layers	X: DNA clamp (From Topology)	H: DNA clamp (From Topology)	T: DNA clamp	F: Herpes_DNAp_acc_2nd	ECOD (1.6)
G	Herpes_DNAp_acc_1st	e2z0lG1	A: a+b two layers	X: DNA clamp (From Topology)	H: DNA clamp (From Topology)	T: DNA clamp	F: Herpes_DNAp_acc_1st	ECOD (1.6)
B	Herpes_DNAp_acc_2nd	e2z0lB2	A: a+b two layers	X: DNA clamp (From Topology)	H: DNA clamp (From Topology)	T: DNA clamp	F: Herpes_DNAp_acc_2nd	ECOD (1.6)
B	Herpes_DNAp_acc_1st	e2z0lB1	A: a+b two layers	X: DNA clamp (From Topology)	H: DNA clamp (From Topology)	T: DNA clamp	F: Herpes_DNAp_acc_1st	ECOD (1.6)
H	Herpes_DNAp_acc_2nd	e2z0lH2	A: a+b two layers	X: DNA clamp (From Topology)	H: DNA clamp (From Topology)	T: DNA clamp	F: Herpes_DNAp_acc_2nd	ECOD (1.6)
H	Herpes_DNAp_acc_1st	e2z0lH1	A: a+b two layers	X: DNA clamp (From Topology)	H: DNA clamp (From Topology)	T: DNA clamp	F: Herpes_DNAp_acc_1st	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen		CATH (4.3.0)
C	3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen		CATH (4.3.0)
D	3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen		CATH (4.3.0)
E	3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen		CATH (4.3.0)
F	3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen		CATH (4.3.0)
G	3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen		CATH (4.3.0)
B	3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen		CATH (4.3.0)
H	3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF04929	Herpes DNA replication accessory factor (Herpes_DNAp_acc)	Herpes DNA replication accessory factor	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Early antigen protein D	DNA binding binding organic cyclic compound binding nucleic acid binding	symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms modulation by symbiont of host process symbiont-mediated perturbation of host cell cycle progression cellular process symbiont-mediated perturbation of host cell cycle G1/S transition checkpoint modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction cellular biosynthetic process viral life cycle nucleobase-containing compound metabolic process nucleic acid biosynthetic process organic substance metabolic process symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms modulation by symbiont of host process symbiont-mediated perturbation of host cell cycle progression cellular process symbiont-mediated perturbation of host cell cycle G1/S transition checkpoint modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction cellular biosynthetic process viral life cycle nucleobase-containing compound metabolic process nucleic acid biosynthetic process organic substance metabolic process organic substance biosynthetic process viral process bidirectional double-stranded viral DNA replication cellular metabolic process viral DNA genome replication primary metabolic process DNA metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process viral genome replication organic cyclic compound biosynthetic process metabolic process macromolecule metabolic process DNA biosynthetic process	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle virion component viral tegument

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR007013	DNA polymerase processivity factor, herpesviridae	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.