2YNQ | pdb_00002ynq

Crystal Structure of Geobacillus thermodenitrificans EssB extracellular fragment

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	YukC_C	e2ynqA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: EssB extracellular domain (From Topology)	T: EssB extracellular domain	F: YukC_C	ECOD (1.6)
B	YukC_C	e2ynqB1	A: alpha superhelices	X: Repetitive alpha hairpins	H: EssB extracellular domain (From Topology)	T: EssB extracellular domain	F: YukC_C	ECOD (1.6)
C	YukC_C	e2ynqC1	A: alpha superhelices	X: Repetitive alpha hairpins	H: EssB extracellular domain (From Topology)	T: EssB extracellular domain	F: YukC_C	ECOD (1.6)
D	YukC_C	e2ynqD1	A: alpha superhelices	X: Repetitive alpha hairpins	H: EssB extracellular domain (From Topology)	T: EssB extracellular domain	F: YukC_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.25.40.680	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Type VII secretion system EssB, C-terminal-like domain	CATH (4.3.0)
B	1.25.40.680	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Type VII secretion system EssB, C-terminal-like domain	CATH (4.3.0)
C	1.25.40.680	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Type VII secretion system EssB, C-terminal-like domain	CATH (4.3.0)
D	1.25.40.680	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Type VII secretion system EssB, C-terminal-like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF10140	WXG100 protein secretion system (Wss), protein YukC (YukC)	WXG100 protein secretion system (Wss), protein YukC	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	ESSB	identical protein binding protein binding binding	-	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR018778	Type VII secretion system EssB	Family
A, B, C, D	IPR042565	Type VII secretion system EssB, C-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.