2YHG

Ab initio phasing of a nucleoside hydrolase-related hypothetical protein from Saccharophagus degradans that is associated with carbohydrate metabolism


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF21027e2yhgA6 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF21027ECOD (1.6)
APF07632e2yhgA5 A: a/b three-layered sandwichesX: Nucleoside hydrolase (From Topology)H: Nucleoside hydrolase (From Topology)T: Nucleoside hydrolaseF: PF07632ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.90.245.10 Alpha Beta Alpha-Beta Complex Inosine-uridine Nucleoside N-ribohydrolase Chain ACATH (4.3.0)
A2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07632Cellulose-binding Sde182, nucleoside hydrolase-like domain (Sde182_NH-like)Cellulose-binding Sde182, nucleoside hydrolase-like domainThis Rossmann-related domain is found at the N-terminal end of the C-terminal domain region of the cellulose-binding protein Sde182 from Saccharophagus degradans (Swiss:Q21PD3), which seems to have capacity to bind plant carbohydrates. This domain sh ...This Rossmann-related domain is found at the N-terminal end of the C-terminal domain region of the cellulose-binding protein Sde182 from Saccharophagus degradans (Swiss:Q21PD3), which seems to have capacity to bind plant carbohydrates. This domain shows an alpha/beta configuration with a central beta-sheet of eight beta-strands and 12 alpha-helices. It is structurally similar to pyrimidine-specific ribonucleoside hydrolases (NH) [1]. This domain is also found in other uncharacterised bacterial and fungal proteins.
Domain
PF21027Cellulose-binding protein Sde0182, C-terminal domain (Sde0182_C)Cellulose-binding protein Sde0182, C-terminal domainThis domain is found at the C-terminal end of Cellulose-binding protein Sde0182 from Saccharophagus degradans (Swiss:Q21PD3), which seems to have capacity to bind plant carbohydrates. This region shows a beta-sandwich fold that consists of two beta-s ...This domain is found at the C-terminal end of Cellulose-binding protein Sde0182 from Saccharophagus degradans (Swiss:Q21PD3), which seems to have capacity to bind plant carbohydrates. This region shows a beta-sandwich fold that consists of two beta-sheets with seven beta-strands in total. It has structural similarity to a polycystic kidney domain (PKD, Pfam:PF00801) and lacks the solvent exposed aromatic residues typically associated with an ability to bind carbohydrates [1]. This domain is also found in other uncharacterised bacterial and fungal proteins.
Domain