2YAZ | pdb_00002yaz

The Crystal Structure of Leishmania major dUTPase in complex dUMP

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D [auth E]	d2yaze_	All alpha proteins	all-alpha NTP pyrophosphatases	all-alpha NTP pyrophosphatases	automated matches	automated matches	(Leishmania major ) [TaxId: 5664 ],	SCOPe (2.08)
C [auth D]	d2yazd_	All alpha proteins	all-alpha NTP pyrophosphatases	all-alpha NTP pyrophosphatases	automated matches	automated matches	(Leishmania major ) [TaxId: 5664 ],	SCOPe (2.08)
B	d2yazb_	All alpha proteins	all-alpha NTP pyrophosphatases	all-alpha NTP pyrophosphatases	automated matches	automated matches	(Leishmania major ) [TaxId: 5664 ],	SCOPe (2.08)
A	d2yaza_	All alpha proteins	all-alpha NTP pyrophosphatases	all-alpha NTP pyrophosphatases	automated matches	automated matches	(Leishmania major ) [TaxId: 5664 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth E]	SCOP2B Superfamily	all-alpha NTP pyrophosphatases	8062837	3001174	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	all-alpha NTP pyrophosphatases	8062837	3001174	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	all-alpha NTP pyrophosphatases	8062837	3001174	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	all-alpha NTP pyrophosphatases	8062837	3001174	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth E]		e2yazE1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Pkinase,Pkinase_C	F:	ECOD (20:10:01)
C [auth D]		e2yazD1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Pkinase,Pkinase_C	F:	ECOD (20:10:01)
B		e2yazB1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Pkinase,Pkinase_C	F:	ECOD (20:10:01)
A		e2yazA1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Pkinase,Pkinase_C	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth E]	1.20.1680.10	Mainly Alpha	Up-down Bundle	all-alpha NTP pyrophosphatases	Type II deoxyuridine triphosphatase	CATH (4.3.0)
D [auth E]	1.20.1670.10	Mainly Alpha	Up-down Bundle	all-alpha NTP pyrophosphatase	Type II deoxyuridine triphosphatase	CATH (4.3.0)
C [auth D]	1.20.1680.10	Mainly Alpha	Up-down Bundle	all-alpha NTP pyrophosphatases	Type II deoxyuridine triphosphatase	CATH (4.3.0)
C [auth D]	1.20.1670.10	Mainly Alpha	Up-down Bundle	all-alpha NTP pyrophosphatase	Type II deoxyuridine triphosphatase	CATH (4.3.0)
B	1.20.1680.10	Mainly Alpha	Up-down Bundle	all-alpha NTP pyrophosphatases	Type II deoxyuridine triphosphatase	CATH (4.3.0)
B	1.20.1670.10	Mainly Alpha	Up-down Bundle	all-alpha NTP pyrophosphatase	Type II deoxyuridine triphosphatase	CATH (4.3.0)
A	1.20.1680.10	Mainly Alpha	Up-down Bundle	all-alpha NTP pyrophosphatases	Type II deoxyuridine triphosphatase	CATH (4.3.0)
A	1.20.1670.10	Mainly Alpha	Up-down Bundle	all-alpha NTP pyrophosphatase	Type II deoxyuridine triphosphatase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C [auth D], D [auth E]	PF08761	dUTPase (dUTPase_2)	dUTPase	2-Deoxyuridine 5-triphosphate nucleotidohydrolase (dUTPase) catalyses the hydrolysis of dUTP to dUMP and pyrophosphate (EC:3.6.1.23). Members of this family have a novel all-alpha fold and are unrelated to the all-beta fold found in dUTPases of the ...	2-Deoxyuridine 5-triphosphate nucleotidohydrolase (dUTPase) catalyses the hydrolysis of dUTP to dUMP and pyrophosphate (EC:3.6.1.23). Members of this family have a novel all-alpha fold and are unrelated to the all-beta fold found in dUTPases of the majority of organisms [1]. This family contains both dUTPase homologues of dUTPase including dCTPase of phage T4.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C [auth D], D [auth E]	DUTPASE	pyrophosphatase activity nucleoside triphosphate diphosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides dUTP diphosphatase activity hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity cation binding ion binding binding metal ion binding small molecule binding	-	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth D], D [auth E]	IPR014871	dUTPase/dCTP pyrophosphatase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.