2XR1
DIMERIC ARCHAEAL CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR WITH N-TERMINAL KH DOMAINS (KH-CPSF) FROM METHANOSARCINA MAZEI
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Prokaryotic type KH domain (KH-domain type II) | 8046634 | 4001200 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Prokaryotic type KH domain (KH-domain type II) | 8103563 | 4001200 | SCOP2 (2022-06-29) |
A | SCOP2 Family | beta-CASP RNA-metabolising hydrolases | 8103566 | 4000432 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Prokaryotic type KH domain (KH-domain type II) | 8103564 | 3001043 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Prokaryotic type KH domain (KH-domain type II) | 8103565 | 3001043 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Metallo-hydrolase/oxidoreductase | 8103567 | 3001057 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Prokaryotic type KH domain (KH-domain type II) | 8103565 | 3001043 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Prokaryotic type KH domain (KH-domain type II) | 8103564 | 3001043 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Metallo-hydrolase/oxidoreductase | 8103567 | 3001057 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF07650 | e2xr1A2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF07650 | ECOD (1.6) |
A | PF17214 | e2xr1A3 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF17214 | ECOD (1.6) |
A | PF00753 | e2xr1A4 | A: a+b four layers | X: Metallo-hydrolase/oxidoreductase (From Topology) | H: Metallo-hydrolase/oxidoreductase (From Topology) | T: Metallo-hydrolase/oxidoreductase | F: PF00753 | ECOD (1.6) |
A | PF10996 | e2xr1A5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF10996 | ECOD (1.6) |
B | PF07650 | e2xr1B3 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF07650 | ECOD (1.6) |
B | PF17214 | e2xr1B2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF17214 | ECOD (1.6) |
B | PF00753 | e2xr1B4 | A: a+b four layers | X: Metallo-hydrolase/oxidoreductase (From Topology) | H: Metallo-hydrolase/oxidoreductase (From Topology) | T: Metallo-hydrolase/oxidoreductase | F: PF00753 | ECOD (1.6) |
B | PF10996 | e2xr1B5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF10996 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.300.230 | Alpha Beta | 2-Layer Sandwich | GMP Synthetase | Chain A, domain 3 | CATH (4.3.0) |
A | 3.30.300.20 | Alpha Beta | 2-Layer Sandwich | GMP Synthetase | Chain A, domain 3 | CATH (4.3.0) |
A | 3.60.15.10 | Alpha Beta | 4-Layer Sandwich | Metallo-beta-lactamase | Chain A | CATH (4.3.0) |
A | 3.40.50.10890 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
B | 3.30.300.230 | Alpha Beta | 2-Layer Sandwich | GMP Synthetase | Chain A, domain 3 | CATH (4.3.0) |
B | 3.30.300.20 | Alpha Beta | 2-Layer Sandwich | GMP Synthetase | Chain A, domain 3 | CATH (4.3.0) |
B | 3.60.15.10 | Alpha Beta | 4-Layer Sandwich | Metallo-beta-lactamase | Chain A | CATH (4.3.0) |
B | 3.40.50.10890 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07521 | Zn-dependent metallo-hydrolase RNA specificity domain (RMMBL) | Zn-dependent metallo-hydrolase RNA specificity domain | - | Motif | |
PF07650 | KH domain (KH_2) | KH domain | - | Domain | |
PF17214 | KH domain (KH_7) | KH domain | - | Domain | |
PF10996 | Beta-Casp domain (Beta-Casp) | Beta-Casp domain | The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains [1]. | Domain | |
PF00753 | Metallo-beta-lactamase superfamily (Lactamase_B) | Metallo-beta-lactamase superfamily | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100 KD SUBUNIT | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004087 | K Homology domain | Domain | |
IPR004044 | K Homology domain, type 2 | Domain | |
IPR015946 | K homology domain-like, alpha/beta | Homologous Superfamily | |
IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain | Domain | |
IPR036866 | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | Homologous Superfamily | |
IPR033769 | KH domain, archaeal | Domain | |
IPR019975 | Transcription termination factor CPSF1, archaea | Family | |
IPR001279 | Metallo-beta-lactamase | Domain | |
IPR009019 | K homology domain superfamily, prokaryotic type | Homologous Superfamily | |
IPR022712 | Beta-Casp domain | Domain |