2X18 | pdb_00002x18

The crystal structure of the PH domain of human AKT3 protein kinase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2x18a_	All beta proteins	PH domain-like barrel	PH domain-like	Pleckstrin-homology domain (PH domain)	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2x18b_	All beta proteins	PH domain-like barrel	PH domain-like	Pleckstrin-homology domain (PH domain)	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d2x18c_	All beta proteins	PH domain-like barrel	PH domain-like	Pleckstrin-homology domain (PH domain)	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d2x18d_	All beta proteins	PH domain-like barrel	PH domain-like	Pleckstrin-homology domain (PH domain)	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d2x18e_	All beta proteins	PH domain-like barrel	PH domain-like	Pleckstrin-homology domain (PH domain)	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d2x18f_	All beta proteins	PH domain-like barrel	PH domain-like	Pleckstrin-homology domain (PH domain)	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G	d2x18g_	All beta proteins	PH domain-like barrel	PH domain-like	Pleckstrin-homology domain (PH domain)	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
H	d2x18h_	All beta proteins	PH domain-like barrel	PH domain-like	Pleckstrin-homology domain (PH domain)	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	PH domain-like	8062133	3000134	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PH domain-like	8062133	3000134	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PH domain-like	8062133	3000134	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PH domain-like	8062133	3000134	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	PH domain-like	8062133	3000134	SCOP2B (2022-06-29)
F	SCOP2 Family	Pleckstrin-homology domain (PH domain)	8062132	4002395	SCOP2 (2022-06-29)
F	SCOP2 Superfamily	PH domain-like	8062133	3000134	SCOP2 (2022-06-29)
G	SCOP2B Superfamily	PH domain-like	8062133	3000134	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	PH domain-like	8062133	3000134	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PH	e2x18A1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: PH	ECOD (1.6)
B	PH	e2x18B1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: PH	ECOD (1.6)
C	PH	e2x18C1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: PH	ECOD (1.6)
D	PH	e2x18D1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: PH	ECOD (1.6)
E	PH	e2x18E1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: PH	ECOD (1.6)
F	PH	e2x18F1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: PH	ECOD (1.6)
G	PH	e2x18G1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: PH	ECOD (1.6)
H	PH	e2x18H1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: PH	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
B	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
C	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
D	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
E	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
F	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
G	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
H	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00169	PH domain (PH)	PH domain	PH stands for pleckstrin homology.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	RAC-GAMMA SERINE/THREONINE-PROTEIN KINASE	catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity protein serine kinase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity protein serine kinase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein serine/threonine kinase activity	developmental process multicellular organismal process regulation of biological process regulation of developmental process positive regulation of artery morphogenesis blood vessel morphogenesis tube development artery development biological regulation positive regulation of biological process vasculature development circulatory system development positive regulation of developmental process multicellular organism development anatomical structure morphogenesis developmental process multicellular organismal process regulation of biological process regulation of developmental process positive regulation of artery morphogenesis blood vessel morphogenesis tube development artery development biological regulation positive regulation of biological process vasculature development circulatory system development positive regulation of developmental process multicellular organism development anatomical structure morphogenesis tube morphogenesis regulation of artery morphogenesis anatomical structure development artery morphogenesis regulation of anatomical structure morphogenesis blood vessel development system development multicellular organismal-level homeostasis homeostatic process homeostasis of number of cells within a tissue anatomical structure homeostasis tissue homeostasis homeostasis of number of cells head development brain morphogenesis animal organ development brain development nervous system development central nervous system development animal organ morphogenesis cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction positive regulation of TOR signaling signal transduction positive regulation of cellular process TOR signaling regulation of signaling regulation of TOR signaling positive regulation of intracellular signal transduction regulation of response to stimulus regulation of cell communication cellular process positive regulation of signaling positive regulation of locomotion regulation of cell motility regulation of blood vessel endothelial cell migration endothelial cell migration positive regulation of cell migration positive regulation of blood vessel endothelial cell migration regulation of locomotion positive regulation of endothelial cell migration positive regulation of cell motility regulation of cell migration blood vessel endothelial cell migration regulation of endothelial cell migration cell migration cell motility locomotion cell population proliferation positive regulation of cell population proliferation endothelial cell proliferation positive regulation of epithelial cell proliferation regulation of vascular endothelial cell proliferation regulation of endothelial cell proliferation regulation of cell population proliferation positive regulation of endothelial cell proliferation regulation of epithelial cell proliferation vascular endothelial cell proliferation epithelial cell proliferation positive regulation of vascular endothelial cell proliferation protein phosphorylation phosphorylation primary metabolic process macromolecule modification phosphate-containing compound metabolic process metabolic process protein metabolic process macromolecule metabolic process protein modification process phosphorus metabolic process angiogenesis regulation of vasculature development regulation of multicellular organismal process regulation of multicellular organismal development positive regulation of angiogenesis positive regulation of vasculature development regulation of angiogenesis anatomical structure formation involved in morphogenesis positive regulation of multicellular organismal process regulation of cellular senescence negative regulation of biological process cellular senescence negative regulation of cellular senescence cellular response to stress response to stress negative regulation of cellular process positive regulation of cell size cellular component organization regulation of cellular component size cellular component organization or biogenesis regulation of biological quality regulation of cell size regulation of anatomical structure size negative regulation of signaling negative regulation of intracellular signal transduction regulation of cellular response to stress PERK-mediated unfolded protein response endoplasmic reticulum unfolded protein response regulation of response to endoplasmic reticulum stress integrated stress response signaling negative regulation of cell communication regulation of endoplasmic reticulum unfolded protein response regulation of response to stress intracellular signaling cassette ER-nucleus signaling pathway response to endoplasmic reticulum stress negative regulation of endoplasmic reticulum unfolded protein response negative regulation of response to endoplasmic reticulum stress cellular response to topologically incorrect protein regulation of PERK-mediated unfolded protein response negative regulation of response to stimulus cellular response to unfolded protein response to unfolded protein negative regulation of signal transduction negative regulation of PERK-mediated unfolded protein response response to topologically incorrect protein cell migration involved in sprouting angiogenesis positive regulation of cell migration involved in sprouting angiogenesis regulation of cell migration involved in sprouting angiogenesis sprouting angiogenesis	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane nucleus membrane-enclosed lumen membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen nuclear lumen Golgi apparatus endomembrane system intracellular membraneless organelle ciliary basal body microtubule organizing center cytoskeleton membraneless organelle microtubule cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR017441	Protein kinase, ATP binding site	Binding Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001849	Pleckstrin homology domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000719	Protein kinase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011993	PH-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000961	AGC-kinase, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR034675	Protein kinase B gamma, catalytic domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR039026	Protein Kinase B, pleckstrin homology domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR017892	Protein kinase, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR008271	Serine/threonine-protein kinase, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H	Pharos: Q9Y243	megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 2 glioblastoma megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 1 malignant colon neoplasm medulloblastoma microcephaly osteosarcoma acute myeloid leukemia pancreatic intraductal papillary-mucinous neoplasm attention deficit hyperactivity disorder, inattentive type polydactyly cerebral cortical dysplasia spina bifida Epileptic encephalopathy hydrocephalus megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 2 glioblastoma megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 1 malignant colon neoplasm medulloblastoma microcephaly osteosarcoma acute myeloid leukemia pancreatic intraductal papillary-mucinous neoplasm attention deficit hyperactivity disorder, inattentive type polydactyly cerebral cortical dysplasia spina bifida Epileptic encephalopathy hydrocephalus large cell medulloblastoma macrocephaly/megalencephaly syndrome, autosomal recessive malignant ependymoma megalencephaly-polymicrogyria-postaxial polydactyly-hydrocephalus syndrome nasopharyngeal carcinoma ovarian cancer adrenal cortex carcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia brain glioma psoriasis tuberculosis intellectual disability lung adenocarcinoma malignant glioma melanoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma anorexia nervosa pituitary cancer breast cancer Sjogren syndrome cystic fibrosis ulcerative colitis hemimegalencephaly invasive ductal breast carcinoma lung cancer

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E A, B, C, D, E, F, G, H	OPM	Monotopic/peripheral	All beta monotopic/peripheral	PH domain-like	Pleckstrin-homology domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.