2WZ7 | pdb_00002wz7

Crystal structure of the N-terminal domain of E.coli YbgF

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	SlyX-like	8090359	3002425	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SlyX-like	8090359	3002425	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	SlyX-like	8090359	3002425	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	SlyX-like	8090359	3002425	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	SlyX-like	8090359	3002425	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SlyX-like	8090359	3002425	SCOP2B (2022-06-29)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.5.110	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
B	1.20.5.110	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
D	1.20.5.110	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
F	1.20.5.110	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
E	1.20.5.110	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
C	1.20.5.110	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF16331	TolA binding protein trimerisation (TolA_bind_tri)	TolA binding protein trimerisation	This is the N-terminal domain of the YbgF protein. YbgF binds to TolA. This domain mediates trimerisation [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	UNCHARACTERIZED PROTEIN YBGF	-	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein trimerization protein complex oligomerization protein-containing complex assembly cellular process cellular component organization or biogenesis cell division reproductive process in single-celled organism reproductive process cytokinesis cell cycle cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein trimerization protein complex oligomerization protein-containing complex assembly cellular process cellular component organization or biogenesis cell division reproductive process in single-celled organism reproductive process cytokinesis cell cycle FtsZ-dependent cytokinesis cell cycle process asexual reproduction	cellular anatomical structure outer membrane-bounded periplasmic space cell envelope periplasmic space protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR032519	YbgF, trimerisation domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR014162	Cell division coordinator CpoB, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR034706	Cell division coordinator CpoB	Family
A, B, C, D, E A, B, C, D, E, F	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR019734	Tetratricopeptide repeat	Repeat

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.