2WVW
Cryo-EM structure of the RbcL-RbcX complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | RuBisCo C-terminal domain | 8043701 | 3000552 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RuBisCO large subunit small (N-terminal) domain | 8035453 | 3001258 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RuBisCo C-terminal domain | 8043701 | 3000552 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RuBisCO large subunit small (N-terminal) domain | 8035453 | 3001258 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | RuBisCo C-terminal domain | 8043701 | 3000552 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | RuBisCO large subunit small (N-terminal) domain | 8035453 | 3001258 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RuBisCo C-terminal domain | 8043701 | 3000552 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RuBisCO large subunit small (N-terminal) domain | 8035453 | 3001258 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RuBisCo C-terminal domain | 8043701 | 3000552 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RuBisCO large subunit small (N-terminal) domain | 8035453 | 3001258 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RuBisCo C-terminal domain | 8043701 | 3000552 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RuBisCO large subunit small (N-terminal) domain | 8035453 | 3001258 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | RuBisCo C-terminal domain | 8043701 | 3000552 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | RuBisCO large subunit small (N-terminal) domain | 8035453 | 3001258 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | RuBisCo C-terminal domain | 8043701 | 3000552 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | RuBisCO large subunit small (N-terminal) domain | 8035453 | 3001258 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | RbcX-like | 8035592 | 3001662 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | RbcX-like | 8035592 | 3001662 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | RbcX-like | 8035592 | 3001662 | SCOP2B (2022-06-29) |
U | SCOP2B Superfamily | RbcX-like | 8035592 | 3001662 | SCOP2B (2022-06-29) |
V | SCOP2B Superfamily | RbcX-like | 8035592 | 3001662 | SCOP2B (2022-06-29) |
W | SCOP2B Superfamily | RbcX-like | 8035592 | 3001662 | SCOP2B (2022-06-29) |
X | SCOP2B Superfamily | RbcX-like | 8035592 | 3001662 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | RbcX-like | 8035592 | 3001662 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | RbcX-like | 8035592 | 3001662 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | RbcX-like | 8035592 | 3001662 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | RbcX-like | 8035592 | 3001662 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | RbcX-like | 8035592 | 3001662 | SCOP2B (2022-06-29) |
Q | SCOP2B Superfamily | RbcX-like | 8035592 | 3001662 | SCOP2B (2022-06-29) |
R | SCOP2B Superfamily | RbcX-like | 8035592 | 3001662 | SCOP2B (2022-06-29) |
S | SCOP2B Superfamily | RbcX-like | 8035592 | 3001662 | SCOP2B (2022-06-29) |
T | SCOP2B Superfamily | RbcX-like | 8035592 | 3001662 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | PF02788 | e2wvwB1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
B | PF00016 | e2wvwB2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
C | PF02788 | e2wvwC1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
C | PF00016 | e2wvwC2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
G | PF02788 | e2wvwG1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
G | PF00016 | e2wvwG2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
A | PF02788 | e2wvwA1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
A | PF00016 | e2wvwA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
D | PF02788 | e2wvwD1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
D | PF00016 | e2wvwD2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
E | PF02788 | e2wvwE1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
E | PF00016 | e2wvwE2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
F | PF02788 | e2wvwF1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
F | PF00016 | e2wvwF2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
H | PF02788 | e2wvwH1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
H | PF00016 | e2wvwH2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
I | PF02341 | e2wvwI1 | A: alpha arrays | X: RbcX-like | H: RbcX-like (From Topology) | T: RbcX-like | F: PF02341 | ECOD (1.6) |
M | PF02341 | e2wvwM1 | A: alpha arrays | X: RbcX-like | H: RbcX-like (From Topology) | T: RbcX-like | F: PF02341 | ECOD (1.6) |
P | PF02341 | e2wvwP1 | A: alpha arrays | X: RbcX-like | H: RbcX-like (From Topology) | T: RbcX-like | F: PF02341 | ECOD (1.6) |
U | PF02341 | e2wvwU1 | A: alpha arrays | X: RbcX-like | H: RbcX-like (From Topology) | T: RbcX-like | F: PF02341 | ECOD (1.6) |
V | PF02341 | e2wvwV1 | A: alpha arrays | X: RbcX-like | H: RbcX-like (From Topology) | T: RbcX-like | F: PF02341 | ECOD (1.6) |
W | PF02341 | e2wvwW1 | A: alpha arrays | X: RbcX-like | H: RbcX-like (From Topology) | T: RbcX-like | F: PF02341 | ECOD (1.6) |
X | PF02341 | e2wvwX1 | A: alpha arrays | X: RbcX-like | H: RbcX-like (From Topology) | T: RbcX-like | F: PF02341 | ECOD (1.6) |
J | PF02341 | e2wvwJ1 | A: alpha arrays | X: RbcX-like | H: RbcX-like (From Topology) | T: RbcX-like | F: PF02341 | ECOD (1.6) |
K | PF02341 | e2wvwK1 | A: alpha arrays | X: RbcX-like | H: RbcX-like (From Topology) | T: RbcX-like | F: PF02341 | ECOD (1.6) |
L | PF02341 | e2wvwL1 | A: alpha arrays | X: RbcX-like | H: RbcX-like (From Topology) | T: RbcX-like | F: PF02341 | ECOD (1.6) |
N | PF02341 | e2wvwN1 | A: alpha arrays | X: RbcX-like | H: RbcX-like (From Topology) | T: RbcX-like | F: PF02341 | ECOD (1.6) |
O | PF02341 | e2wvwO1 | A: alpha arrays | X: RbcX-like | H: RbcX-like (From Topology) | T: RbcX-like | F: PF02341 | ECOD (1.6) |
Q | PF02341 | e2wvwQ1 | A: alpha arrays | X: RbcX-like | H: RbcX-like (From Topology) | T: RbcX-like | F: PF02341 | ECOD (1.6) |
R | PF02341 | e2wvwR1 | A: alpha arrays | X: RbcX-like | H: RbcX-like (From Topology) | T: RbcX-like | F: PF02341 | ECOD (1.6) |
S | PF02341 | e2wvwS1 | A: alpha arrays | X: RbcX-like | H: RbcX-like (From Topology) | T: RbcX-like | F: PF02341 | ECOD (1.6) |
T | PF02341 | e2wvwT1 | A: alpha arrays | X: RbcX-like | H: RbcX-like (From Topology) | T: RbcX-like | F: PF02341 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02788 | Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N) | Ribulose bisphosphate carboxylase large chain, N-terminal domain | The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. | Domain | |
PF00016 | Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large) | Ribulose bisphosphate carboxylase large chain, catalytic domain | The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold. | Domain | |
PF02341 | RbcX protein (RbcX) | RbcX protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR020888 | Ribulose bisphosphate carboxylase large subunit, type I | Family | |
IPR036376 | Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily | Homologous Superfamily | |
IPR020878 | Ribulose bisphosphate carboxylase, large chain, active site | Active Site | |
IPR000685 | Ribulose bisphosphate carboxylase, large subunit, C-terminal | Domain | |
IPR033966 | RuBisCO | Family | |
IPR017443 | Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal | Domain | |
IPR036422 | RuBisCO large subunit, N-terminal domain superfamily | Homologous Superfamily | |
IPR046381 | RuBisCO chaperone RbcX | Family | |
IPR003435 | Chaperonin-like RbcX | Family | |
IPR038052 | Chaperonin-like RbcX superfamily | Homologous Superfamily |