Annotations: 2WVW

Cryo-EM structure of the RbcL-RbcX complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I	SCOP2B Superfamily	RbcX-like	8035592	3001662	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	RbcX-like	8035592	3001662	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	RbcX-like	8035592	3001662	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	RbcX-like	8035592	3001662	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	RbcX-like	8035592	3001662	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	RbcX-like	8035592	3001662	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	RbcX-like	8035592	3001662	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	RbcX-like	8035592	3001662	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	RbcX-like	8035592	3001662	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	RbcX-like	8035592	3001662	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	RbcX-like	8035592	3001662	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	RbcX-like	8035592	3001662	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	RbcX-like	8035592	3001662	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	RbcX-like	8035592	3001662	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	RbcX-like	8035592	3001662	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	RbcX-like	8035592	3001662	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043701	3000552	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035453	3001258	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043701	3000552	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035453	3001258	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043701	3000552	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035453	3001258	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043701	3000552	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035453	3001258	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043701	3000552	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035453	3001258	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043701	3000552	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035453	3001258	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043701	3000552	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035453	3001258	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043701	3000552	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035453	3001258	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	LplA-B_cat	e2wvwI1	A: beta barrels	X: EGF-like	H: EGF-related	T: EGF/Laminin	F: LplA-B_cat	ECOD (v294.2)
J	Hepatitis_core	e2wvwJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
K	Hepatitis_core	e2wvwK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
M	Hepatitis_core	e2wvwM1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
N	Hepatitis_core	e2wvwN1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
O	Hepatitis_core	e2wvwO1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
P	Hepatitis_core	e2wvwP1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
Q	Hepatitis_core	e2wvwQ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
R	Hepatitis_core	e2wvwR1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
S	Hepatitis_core	e2wvwS1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
T	Hepatitis_core	e2wvwT1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
U	Hepatitis_core	e2wvwU1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
V	Hepatitis_core	e2wvwV1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
W	Hepatitis_core	e2wvwW1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
X	Hepatitis_core	e2wvwX1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
L	Hepatitis_core	e2wvwL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
A	LplA-B_cat	e2wvwA1	A: beta barrels	X: EGF-like	H: EGF-related	T: EGF/Laminin	F: LplA-B_cat	ECOD (v294.2)
B	Hepatitis_core	e2wvwB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
C	Hepatitis_core	e2wvwC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
D	Hepatitis_core	e2wvwD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
E	Hepatitis_core	e2wvwE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
F	Hepatitis_core	e2wvwF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
G	Hepatitis_core	e2wvwG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)
H	Hepatitis_core	e2wvwH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Hepatitis_core	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I, J, K, L, M I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	RBCX PROTEIN	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity protein folding chaperone	cellular component organization cellular component biogenesis cellular component assembly ribulose bisphosphate carboxylase complex assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis photosynthesis metabolic process carbon fixation	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle carboxysome membraneless organelle intracellular membraneless organelle cytoplasm
A, B, C, D, E A, B, C, D, E, F, G, H	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity monooxygenase activity oxidoreductase activity	metabolic compound salvage biosynthetic process metabolic process cellular process photorespiration carbohydrate metabolic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process carbon fixation	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle carboxysome membraneless organelle intracellular membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I, J, K, L, M I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR046381	RuBisCO chaperone RbcX	Family
I, J, K, L, M I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR003435	Chaperonin-like RbcX	Family
I, J, K, L, M I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR038052	Chaperonin-like RbcX superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR020888	Ribulose bisphosphate carboxylase large subunit, type I	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR020878	Ribulose bisphosphate carboxylase, large chain, active site	Active Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR033966	RuBisCO	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036422	RuBisCO large subunit, N-terminal domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

2WVW | pdb_00002wvw

Cryo-EM structure of the RbcL-RbcX complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage