2WQT | pdb_00002wqt

Dodecahedral assembly of MhpD

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
T	d2wqtt_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
S	d2wqts_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
R	d2wqtr_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
Q	d2wqtq_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
P	d2wqtp_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
O	d2wqto_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
N	d2wqtn_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
M	d2wqtm_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
L	d2wqtl_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
K	d2wqtk_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
J	d2wqtj_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
I	d2wqti_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
H	d2wqth_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
G	d2wqtg_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
F	d2wqtf_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
E	d2wqte_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
D	d2wqtd_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
C	d2wqtc_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B	d2wqtb_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
A	d2wqta_	Alpha and beta proteins (a+b)	FAH	FAH	FAH	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
T	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	FAH	8039718	3001446	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
T	Peptidase_S9, Abhydrolase_4, Hydrolase_4	e2wqtT1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Peptidase_S9, Abhydrolase_4, Hydrolase_4	ECOD (v294.1)
S	Peptidase_S9, Abhydrolase_4, Hydrolase_4	e2wqtS1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Peptidase_S9, Abhydrolase_4, Hydrolase_4	ECOD (v294.1)
R	Peptidase_S9, Abhydrolase_4, Hydrolase_4	e2wqtR1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Peptidase_S9, Abhydrolase_4, Hydrolase_4	ECOD (v294.1)
Q	Peptidase_S9, Abhydrolase_4, Hydrolase_4	e2wqtQ1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Peptidase_S9, Abhydrolase_4, Hydrolase_4	ECOD (v294.1)
P	Peptidase_S9, Abhydrolase_4, Hydrolase_4	e2wqtP1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Peptidase_S9, Abhydrolase_4, Hydrolase_4	ECOD (v294.1)
O	Peptidase_S9, Abhydrolase_4, Hydrolase_4	e2wqtO1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Peptidase_S9, Abhydrolase_4, Hydrolase_4	ECOD (v294.1)
N	Peptidase_S9, Abhydrolase_4, Hydrolase_4	e2wqtN1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Peptidase_S9, Abhydrolase_4, Hydrolase_4	ECOD (v294.1)
M	Peptidase_S9, Abhydrolase_4, Hydrolase_4	e2wqtM1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Peptidase_S9, Abhydrolase_4, Hydrolase_4	ECOD (v294.1)
L	Peptidase_S9, Abhydrolase_4, Hydrolase_4	e2wqtL1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Peptidase_S9, Abhydrolase_4, Hydrolase_4	ECOD (v294.1)
K	Peptidase_S9, Abhydrolase_4, Hydrolase_4	e2wqtK1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Peptidase_S9, Abhydrolase_4, Hydrolase_4	ECOD (v294.1)
J	Peptidase_S9, Abhydrolase_4, Hydrolase_4	e2wqtJ1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Peptidase_S9, Abhydrolase_4, Hydrolase_4	ECOD (v294.1)
I	Peptidase_S9, Abhydrolase_4, Hydrolase_4	e2wqtI1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Peptidase_S9, Abhydrolase_4, Hydrolase_4	ECOD (v294.1)
H	Peptidase_S9, Abhydrolase_4, Hydrolase_4	e2wqtH1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Peptidase_S9, Abhydrolase_4, Hydrolase_4	ECOD (v294.1)
G	Peptidase_S9, Abhydrolase_4, Hydrolase_4	e2wqtG1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Peptidase_S9, Abhydrolase_4, Hydrolase_4	ECOD (v294.1)
F	Peptidase_S9, Abhydrolase_4, Hydrolase_4	e2wqtF1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Peptidase_S9, Abhydrolase_4, Hydrolase_4	ECOD (v294.1)
E	Peptidase_S9, Abhydrolase_4, Hydrolase_4	e2wqtE1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Peptidase_S9, Abhydrolase_4, Hydrolase_4	ECOD (v294.1)
D	Peptidase_S9, Abhydrolase_4, Hydrolase_4	e2wqtD1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Peptidase_S9, Abhydrolase_4, Hydrolase_4	ECOD (v294.1)
C	Peptidase_S9, Abhydrolase_4, Hydrolase_4	e2wqtC1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Peptidase_S9, Abhydrolase_4, Hydrolase_4	ECOD (v294.1)
B	Peptidase_S9, Abhydrolase_4, Hydrolase_4	e2wqtB1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Peptidase_S9, Abhydrolase_4, Hydrolase_4	ECOD (v294.1)
A	DJ-1_PfpI	e2wqtA1	A: a/b three-layered sandwiches	X: EGF-like	H: EGF-related	T: EGF/Laminin	F: DJ-1_PfpI	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
T	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)
S	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)
R	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)
Q	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)
P	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)
O	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)
N	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)
M	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)
L	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)
K	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)
J	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)
I	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)
H	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)
G	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)
F	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)
E	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)
D	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)
C	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)
B	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)
A	3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	PF01557	Fumarylacetoacetate (FAA) hydrolase C-terminal (FAA_hydrolase)	Fumarylacetoacetate (FAA) hydrolase C-terminal	This entry consists of fumarylacetoacetate (FAA) hydrolase, or fumarylacetoacetate hydrolase (FAH) and it also includes HHDD isomerase/OPET decarboxylase from E. coli strain W. FAA is the last enzyme in the tyrosine catabolic pathway, it hydroly ...	This entry consists of fumarylacetoacetate (FAA) hydrolase, or fumarylacetoacetate hydrolase (FAH) and it also includes HHDD isomerase/OPET decarboxylase from E. coli strain W. FAA is the last enzyme in the tyrosine catabolic pathway, it hydrolyses fumarylacetoacetate into fumarate and acetoacetate which then join the citric acid cycle [1]. Mutations in FAA cause type I tyrosinemia in humans this is an inherited disorder mainly affecting the liver leading to liver cirrhosis, hepatocellular carcinoma, renal tubular damages and neurologic crises amongst other symptoms [1]. The enzymatic defect causes the toxic accumulation of phenylalanine/tyrosine catabolites [3]. The E. coli W enzyme HHDD isomerase/OPET decarboxylase contains two copies of this domain and functions in fourth and fifth steps of the homoprotocatechuate pathway; here it decarboxylates OPET to HHDD and isomerises this to OHED. The final products of this pathway are pyruvic acid and succinic semialdehyde. This family also includes various hydratases and 4-oxalocrotonate decarboxylases which are involved in the bacterial meta-cleavage pathways for degradation of aromatic compounds. 2-hydroxypentadienoic acid hydratase encoded by mhpD in E. coli Swiss:P77608 is involved in the phenylpropionic acid pathway of E. coli and catalyses the conversion of 2-hydroxy pentadienoate to 4-hydroxy-2-keto-pentanoate and uses a Mn2+ co-factor [5]. OHED hydratase encoded by hpcG in E. coli Swiss:P42270 is involved in the homoprotocatechuic acid (HPC) catabolism [6]. XylI in P. putida Swiss:P49155 is a 4-Oxalocrotonate decarboxylase [7].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	2-KETO-4-PENTENOATE HYDRATASE	cation binding manganese ion binding transition metal ion binding ion binding binding metal ion binding small molecule binding hydro-lyase activity 2-oxopent-4-enoate hydratase activity lyase activity catalytic activity carbon-oxygen lyase activity identical protein binding protein binding	cellular response to stimulus catabolic process benzene-containing compound metabolic process response to stimulus oxoacid metabolic process cellular response to xenobiotic stimulus carboxylic acid metabolic process organic acid catabolic process organic acid metabolic process xenobiotic catabolic process xenobiotic metabolic process response to xenobiotic stimulus cellular response to chemical stimulus 3-phenylpropionate catabolic process monocarboxylic acid catabolic process cellular response to stimulus catabolic process benzene-containing compound metabolic process response to stimulus oxoacid metabolic process cellular response to xenobiotic stimulus carboxylic acid metabolic process organic acid catabolic process organic acid metabolic process xenobiotic catabolic process xenobiotic metabolic process response to xenobiotic stimulus cellular response to chemical stimulus 3-phenylpropionate catabolic process monocarboxylic acid catabolic process response to chemical carboxylic acid catabolic process metabolic process cellular process small molecule metabolic process monocarboxylic acid metabolic process small molecule catabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR036663	Fumarylacetoacetase-like, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR050772	Hydratase/Decarboxylase Family, MhpD Subfamily	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR011234	Fumarylacetoacetase-like, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR023793	2-keto-4-pentenoate hydratase	Family