2WOB | pdb_00002wob

3b' carbohydrate-binding module from the Cel9V glycoside hydrolase from Clostridium thermocellum. Orthorhombic structure

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C [auth E]	d2wobe1	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	(Acetivibrio thermocellus ) [TaxId: 1515 ],	SCOPe (2.08)
C [auth E]	d2wobe2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Acetivibrio thermocellus ) [TaxId: 1515 ],	SCOPe (2.08)
B [auth C]	d2wobc1	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	(Acetivibrio thermocellus ) [TaxId: 1515 ],	SCOPe (2.08)
B [auth C]	d2wobc2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Acetivibrio thermocellus ) [TaxId: 1515 ],	SCOPe (2.08)
A	d2woba1	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	(Acetivibrio thermocellus ) [TaxId: 1515 ],	SCOPe (2.08)
A	d2woba2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Acetivibrio thermocellus ) [TaxId: 1515 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth E]	SCOP2B Superfamily	Carbohydrate-binding domain	8084491	3000706	SCOP2B (2022-06-29)
B [auth C]	SCOP2 Family	Cohesin domain-like	8084490	4002028	SCOP2 (2022-06-29)
B [auth C]	SCOP2 Superfamily	Carbohydrate-binding domain	8084491	3000706	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Carbohydrate-binding domain	8084491	3000706	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth E]	PTE	e2wobE1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PTE	ECOD (v294.1)
B [auth C]	PTE	e2wobC1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PTE	ECOD (v294.1)
A	PTE	e2wobA1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PTE	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth E]	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (4.3.0)
B [auth C]	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (4.3.0)
A	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C], C [auth E]	PF00942	Cellulose binding domain (CBM_3)	Cellulose binding domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth C], C [auth E]	GLYCOSIDE HYDROLASE, FAMILY 9	binding polysaccharide binding cellulose binding carbohydrate binding hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity cation binding ion binding metal ion binding small molecule binding	carbohydrate metabolic process polysaccharide metabolic process catabolic process polysaccharide catabolic process carbohydrate catabolic process metabolic process cellular process primary metabolic process macromolecule metabolic process macromolecule catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C], C [auth E]	IPR002105	Dockerin type I repeat	Repeat
A, B [auth C], C [auth E]	IPR036966	Carbohydrate-binding module 3 superfamily	Homologous Superfamily
A, B [auth C], C [auth E]	IPR016134	Dockerin domain	Domain
A, B [auth C], C [auth E]	IPR001956	Carbohydrate-binding module 3	Domain
A, B [auth C], C [auth E]	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
A, B [auth C], C [auth E]	IPR008928	Six-hairpin glycosidase superfamily	Homologous Superfamily
A, B [auth C], C [auth E]	IPR008965	CBM2/CBM3, carbohydrate-binding domain superfamily	Homologous Superfamily
A, B [auth C], C [auth E]	IPR012341	Six-hairpin glycosidase-like superfamily	Homologous Superfamily
A, B [auth C], C [auth E]	IPR001701	Glycoside hydrolase family 9	Domain
A, B [auth C], C [auth E]	IPR036439	Dockerin domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.