Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASBDS_C_Ne2wbmA1 A: alpha arraysX: RuvA-CH: Hypothetical protein AF0491, middle domain (From Topology)T: Hypothetical protein AF0491, middle domainF: SBDS_C_NECOD (1.6)
ASBDSe2wbmA3 A: a+b two layersX: FYSH domain (From Topology)H: FYSH domain (From Topology)T: FYSH domainF: SBDSECOD (1.6)
ASBDS_C_Ce2wbmA2 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: SBDS_C_CECOD (1.6)
BSBDS_C_Ne2wbmB1 A: alpha arraysX: RuvA-CH: Hypothetical protein AF0491, middle domain (From Topology)T: Hypothetical protein AF0491, middle domainF: SBDS_C_NECOD (1.6)
BSBDSe2wbmB3 A: a+b two layersX: FYSH domain (From Topology)H: FYSH domain (From Topology)T: FYSH domainF: SBDSECOD (1.6)
BSBDS_C_Ce2wbmB2 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: SBDS_C_CECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF09377SBDS protein, domain II (SBDS_domain_II)SBDS protein, domain IIMembers containing this domain are highly conserved in species ranging from archaea to vertebrates and plants [1], including several Shwachman-Bodian-Diamond syndrome (SBDS) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autoso ...Members containing this domain are highly conserved in species ranging from archaea to vertebrates and plants [1], including several Shwachman-Bodian-Diamond syndrome (SBDS) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. These proteins play a role in RNA metabolism [2,3]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes [4]. SBDS protein is composed of three domains. The N-terminal (Pfam:PF01172) (FYSH) domain (domain I) is the most frequent target for disease mutations and contains a novel mixed alpha/beta-fold, the central domain (domain II) represented in this entry consists of a three-helical bundle and the C-terminal domain that has a ferredoxin-like fold [3,5].
Domain
A, B
PF01172Shwachman-Bodian-Diamond syndrome (SBDS) protein (SBDS)Shwachman-Bodian-Diamond syndrome (SBDS) protein- Family
A, B
PF20268SBDS protein, C-terminal domain (SBDS_C)SBDS protein, C-terminal domainMembers containing this domain are highly conserved in species ranging from archaea to vertebrates and plants [1], including several Shwachman-Bodian-Diamond syndrome (SBDS) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autoso ...Members containing this domain are highly conserved in species ranging from archaea to vertebrates and plants [1], including several Shwachman-Bodian-Diamond syndrome (SBDS) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. These proteins play a role in RNA metabolism [2,3]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes [4]. The SBDS protein is composed of three domains. The N-terminal (Pfam:PF01172) (FYSH) domain (domain I) is the most frequent target for disease mutations and contains a novel mixed alpha/beta-fold, the central domain (domain II, Pfam:PF09377) consists of a three-helical bundle and this C-terminal domain which has a ferredoxin-like fold [3,5].
Domain