2VTW | pdb_00002vtw

Structure of the C-terminal head domain of the fowl adenovirus type 1 short fibre

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Virus attachment protein globular domain	8093010	3001376	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Virus attachment protein globular domain	8093010	3001376	SCOP2B (2022-06-29)
D	SCOP2 Family	Fowl adenovirus type 1 head domain-like	8046183	4004935	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	Virus attachment protein globular domain	8093010	3001376	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	Virus attachment protein globular domain	8093010	3001376	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Virus attachment protein globular domain	8093010	3001376	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Virus attachment protein globular domain	8093010	3001376	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Leuk-A4-hydro_C	e2vtwF1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Leuk-A4-hydro_C	ECOD (v294.1)
E	Leuk-A4-hydro_C	e2vtwE1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Leuk-A4-hydro_C	ECOD (v294.1)
D	Leuk-A4-hydro_C	e2vtwD1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Leuk-A4-hydro_C	ECOD (v294.1)
C	Leuk-A4-hydro_C	e2vtwC1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Leuk-A4-hydro_C	ECOD (v294.1)
B	Leuk-A4-hydro_C	e2vtwB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Leuk-A4-hydro_C	ECOD (v294.1)
A	TPP_enzyme_N	e2vtwA1	A: a/b three-layered sandwiches	X: Ribonuclease H-like	H: HUP domains	T: Thiamin diphosphate-binding fold (THDP-binding)	F: TPP_enzyme_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.60.90.30	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Fiber protein 1, C-terminal domain	CATH (4.3.0)
E	2.60.90.30	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Fiber protein 1, C-terminal domain	CATH (4.3.0)
D	2.60.90.30	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Fiber protein 1, C-terminal domain	CATH (4.3.0)
C	2.60.90.30	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Fiber protein 1, C-terminal domain	CATH (4.3.0)
B	2.60.90.30	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Fiber protein 1, C-terminal domain	CATH (4.3.0)
A	2.60.90.30	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Fiber protein 1, C-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF16812	C-terminal head domain of the fowl adenovirus type 1 long fibre (AdHead_fibreRBD)	C-terminal head domain of the fowl adenovirus type 1 long fibre	AdHead_fibreRBD is a C-terminal part of the head domain of the dsDNA viruses, no RNA stage, Adenovirus. This is a globular head domain with an anti-parallel beta-sandwich fold formed by two four-stranded beta-sheets with the same overall topology as ...	AdHead_fibreRBD is a C-terminal part of the head domain of the dsDNA viruses, no RNA stage, Adenovirus. This is a globular head domain with an anti-parallel beta-sandwich fold formed by two four-stranded beta-sheets with the same overall topology as human adenovirus fibre heads. This C-terminal domain is the receptor-binding domain of the avian adenovirus long fibre [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	FIBER PROTEIN 2	-	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host adhesion receptor-mediated virion attachment to host cell biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR010537	Avian adenovirus fibre, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR038486	Fiber protein, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR031822	Fiber protein 1, C-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.