2VSS | pdb_00002vss

Wild-type Hydroxycinnamoyl-CoA hydratase lyase in complex with acetyl- CoA and vanillin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Structure Motif: Primary M-CSA Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2vssa_	Alpha and beta proteins (a/b)	ClpP/crotonase	ClpP/crotonase	automated matches	automated matches	(Pseudomonas fluorescens ) [TaxId: 294 ],	SCOPe (2.08)
B	d2vssb_	Alpha and beta proteins (a/b)	ClpP/crotonase	ClpP/crotonase	automated matches	automated matches	(Pseudomonas fluorescens ) [TaxId: 294 ],	SCOPe (2.08)
C	d2vssc_	Alpha and beta proteins (a/b)	ClpP/crotonase	ClpP/crotonase	automated matches	automated matches	(Pseudomonas fluorescens ) [TaxId: 294 ],	SCOPe (2.08)
D	d2vssd_	Alpha and beta proteins (a/b)	ClpP/crotonase	ClpP/crotonase	automated matches	automated matches	(Pseudomonas fluorescens ) [TaxId: 294 ],	SCOPe (2.08)
E	d2vsse_	Alpha and beta proteins (a/b)	ClpP/crotonase	ClpP/crotonase	automated matches	automated matches	(Pseudomonas fluorescens ) [TaxId: 294 ],	SCOPe (2.08)
F	d2vssf_	Alpha and beta proteins (a/b)	ClpP/crotonase	ClpP/crotonase	automated matches	automated matches	(Pseudomonas fluorescens ) [TaxId: 294 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	ClpP/crotonase	8067193	3000033	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ClpP/crotonase	8067193	3000033	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ClpP/crotonase	8067193	3000033	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ClpP/crotonase	8067193	3000033	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ClpP/crotonase	8067193	3000033	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ClpP/crotonase	8067193	3000033	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Alginate_lyase2	e2vssA1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Alginate_lyase2	ECOD (develop294)
B	Alginate_lyase2	e2vssB1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Alginate_lyase2	ECOD (develop294)
C	Alginate_lyase2	e2vssC1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Alginate_lyase2	ECOD (develop294)
D	Alginate_lyase2	e2vssD1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Alginate_lyase2	ECOD (develop294)
E	Alginate_lyase2	e2vssE1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Alginate_lyase2	ECOD (develop294)
F	Alginate_lyase2	e2vssF1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Alginate_lyase2	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
A	6.10.250.2850	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
B	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
B	6.10.250.2850	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
C	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
C	6.10.250.2850	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
D	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
D	6.10.250.2850	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
E	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
E	6.10.250.2850	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
F	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
F	6.10.250.2850	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	P-HYDROXYCINNAMOYL COA HYDRATASE/LYASE	feruloyl-CoA hydratase/lyase activity lyase activity catalytic activity carbon-carbon lyase activity aldehyde-lyase activity	isoprenoid catabolic process lipid catabolic process catabolic process metabolic process cellular process primary metabolic process lipid metabolic process isoprenoid metabolic process	-
E	P-HYDROXYCINNAMOYL COA HYDRATASE/LYASE	feruloyl-CoA hydratase/lyase activity lyase activity catalytic activity carbon-carbon lyase activity aldehyde-lyase activity	isoprenoid catabolic process lipid catabolic process catabolic process metabolic process cellular process primary metabolic process lipid metabolic process isoprenoid metabolic process	-
F	P-HYDROXYCINNAMOYL COA HYDRATASE/LYASE	feruloyl-CoA hydratase/lyase activity lyase activity catalytic activity carbon-carbon lyase activity aldehyde-lyase activity	isoprenoid catabolic process lipid catabolic process catabolic process metabolic process cellular process primary metabolic process lipid metabolic process isoprenoid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR001753	Enoyl-CoA hydratase/isomerase-like domain	Domain
A, B, C, D	IPR018376	Enoyl-CoA hydratase/isomerase, conserved site	Conserved Site
A, B, C, D	IPR051683	Enoyl-CoA Hydratase/Isomerase Domain-Containing Protein	Family
E	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
E	IPR001753	Enoyl-CoA hydratase/isomerase-like domain	Domain
E	IPR018376	Enoyl-CoA hydratase/isomerase, conserved site	Conserved Site
E	IPR051683	Enoyl-CoA Hydratase/Isomerase Domain-Containing Protein	Family
F	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
F	IPR001753	Enoyl-CoA hydratase/isomerase-like domain	Domain
F	IPR018376	Enoyl-CoA hydratase/isomerase, conserved site	Conserved Site
F	IPR051683	Enoyl-CoA Hydratase/Isomerase Domain-Containing Protein	Family

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

Chains	Enzyme Name	Description	Catalytic Residues
A, B	feruloyl CoA hydratase/lyase M-CSA #347	Catalyses the hydration of the acyl-CoA thioester of ferulic acid and the subsequent retro-aldol cleavage of the hydrated intermediate to yield vanillin (4-hydroxy-3-methoxy-benzaldehyde) and acetyl-CoA. This is a member of the crotonase superfamily.	Defined by 5 residues: MET:A-70TYR:A-75GLY:A-120GLU:A-143TYR:B-239 Some residues are not modelled and lack atomic coordinates. Visualization is not available. Some residues are not modelled and lack atomic coordinates. Structure Motif searching is not available. EC: 4.2.1.101 (PDB Primary Data) EC: 4.1.2.61 (UniProt)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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