Annotations: 2VRH

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d2vrhd1	All alpha proteins	Long alpha-hairpin	Ribosomal protein L29 (L29p)	Ribosomal protein L29 (L29p)	Ribosomal protein L29 (L29p)	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
C	d2vrhc1	All beta proteins	SH3-like barrel	Translation proteins SH3-like domain	Ribosomal proteins L24p and L21e	Ribosomal proteins L24 (L24p)	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
B	d2vrhb1	Alpha and beta proteins (a+b)	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e	L23p	Ribosomal protein L23	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
A	d2vrha1	All alpha proteins	Triger factor/SurA peptide-binding domain-like	Triger factor/SurA peptide-binding domain-like	TF C-terminus	Trigger factor, C-terminal domain	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
A	d2vrha3	Alpha and beta proteins (a+b)	FKBP-like	FKBP-like	FKBP immunophilin/proline isomerase	Trigger factor PPIase domain	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
A	d2vrha2	Alpha and beta proteins (a+b)	Ribosome binding domain-like	Trigger factor ribosome-binding domain	Trigger factor ribosome-binding domain	Trigger factor ribosome-binding domain	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Ribosomal protein L29 (L29p)	8096370	3000713	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8096358	3000334	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ribosomal proteins S24e, L23 and L15e	8035415	3000210	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Rotamase-like	8041597	3000622	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Triger factor/SurA peptide-binding domain-like	8041594	3001632	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Trigger factor ribosome-binding domain	8037652	3001141	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Ribosomal_L29	e2vrhD1	A: alpha bundles	X: Long alpha-hairpin	H: Ribosomal protein L29 (L29p) (From Topology)	T: Ribosomal protein L29 (L29p)	F: Ribosomal_L29	ECOD (1.6)
C	ribosomal_L24_1	e2vrhC1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: ribosomal_L24_1	ECOD (1.6)
B	Ribosomal_L23_2	e2vrhB1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal proteins S24e, L23 and L15e (From Topology)	T: Ribosomal proteins S24e, L23 and L15e	F: Ribosomal_L23_2	ECOD (1.6)
A	Trigger_C	e2vrhA4	A: alpha arrays	X: Triger factor/SurA peptide-binding domain-like (From Homology)	H: Triger factor/SurA peptide-binding domain-like	T: TF C-terminus (Pfam 05698)	F: Trigger_C	ECOD (1.6)
A	FKBP_C	e2vrhA3	A: a+b two layers	X: FKBP-like	H: FKBP-like	T: FKBP-like	F: FKBP_C	ECOD (1.6)
A	Trigger_N	e2vrhA2	A: a+b two layers	X: Glucose permease domain IIB-like	H: Trigger factor ribosome-binding domain (From Topology)	T: Trigger factor ribosome-binding domain	F: Trigger_N	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D	PF00831	Ribosomal L29 protein (Ribosomal_L29)	Ribosomal L29 protein	-	Family
C	PF17136	Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)	Large ribosomal subunit protein uL24, C-terminal domain	This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...	This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].	Domain
C	PF00467	KOW motif (KOW)	KOW motif	-	Family
B	PF00276	Ribosomal protein L23 (Ribosomal_L23)	Ribosomal protein L23	-	Family
A	PF05698	Bacterial trigger factor protein (TF) C-terminus (Trigger_C)	Bacterial trigger factor protein (TF) C-terminus	-	Family
A	PF05697	Bacterial trigger factor protein (TF) (Trigger_N)	Bacterial trigger factor protein (TF)	-	Family
A	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP_C)	FKBP-type peptidyl-prolyl cis-trans isomerase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D	50S RIBOSOMAL PROTEIN L29	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
C	50S RIBOSOMAL PROTEIN L24	RNA binding binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome large ribosomal subunit
B	50S RIBOSOMAL PROTEIN L23	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
A	TRIGGER FACTOR	isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity ribonucleoprotein complex binding protein-containing complex binding binding ribosome binding protein folding chaperone identical protein binding protein binding	primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process 'de novo' cotranslational protein folding metabolic process cellular process protein metabolic process macromolecule metabolic process 'de novo' protein folding protein unfolding cell division primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process 'de novo' cotranslational protein folding metabolic process cellular process protein metabolic process macromolecule metabolic process 'de novo' protein folding protein unfolding cell division localization establishment of protein localization nitrogen compound transport protein transport transport macromolecule localization intracellular protein localization establishment of localization response to stimulus response to stress response to heat response to abiotic stimulus response to temperature stimulus response to copper ion response to metal ion response to chemical stress response to copper ion stress response to metal ion	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D	IPR050063	Universal ribosomal protein uL29	Family
D	IPR001854	Large ribosomal subunit protein uL29	Family
D	IPR036049	Large ribosomal subunit protein uL29 superfamily	Homologous Superfamily
D	IPR018254	Large ribosomal subunit protein uL29, conserved site	Conserved Site
C	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
C	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
C	IPR003256	Large ribosomal subunit protein uL24	Family
C	IPR041988	Large ribosomal subunit protein uL24, KOW domain	Domain
C	IPR005824	KOW	Domain
C	IPR005825	Large ribosomal subunit protein uL24, conserved site	Conserved Site
B	IPR012678	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Homologous Superfamily
B	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
B	IPR001014	Large ribosomal subunit protein uL23, conserved site	Conserved Site
B	IPR013025	Large ribosomal subunit protein uL23-like	Family
A	IPR046357	Peptidyl-prolyl cis-trans isomerase domain superfamily	Homologous Superfamily
A	IPR036611	Trigger factor ribosome-binding domain superfamily	Homologous Superfamily
A	IPR008881	Trigger factor, ribosome-binding, bacterial	Domain
A	IPR027304	Trigger factor/SurA domain superfamily	Homologous Superfamily
A	IPR037041	Trigger factor, C-terminal domain superfamily	Homologous Superfamily
A	IPR001179	FKBP-type peptidyl-prolyl cis-trans isomerase domain	Domain
A	IPR008880	Trigger factor, C-terminal	Domain
A	IPR005215	Trigger factor	Family