2V3M
Structure of the Gar1 domain of NAf1
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF04410 | e2v3mA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF04410 | ECOD (1.6) |
B | PF04410 | e2v3mB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF04410 | ECOD (1.6) |
C | PF04410 | e2v3mC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF04410 | ECOD (1.6) |
D | PF04410 | e2v3mD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF04410 | ECOD (1.6) |
E | PF04410 | e2v3mE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF04410 | ECOD (1.6) |
F | PF04410 | e2v3mF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF04410 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.10.230 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Probable tRNA pseudouridine synthase domain | CATH (4.3.0) |
B | 2.40.10.230 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Probable tRNA pseudouridine synthase domain | CATH (4.3.0) |
C | 2.40.10.230 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Probable tRNA pseudouridine synthase domain | CATH (4.3.0) |
D | 2.40.10.230 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Probable tRNA pseudouridine synthase domain | CATH (4.3.0) |
E | 2.40.10.230 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Probable tRNA pseudouridine synthase domain | CATH (4.3.0) |
F | 2.40.10.230 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Probable tRNA pseudouridine synthase domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04410 | Gar1/Naf1 RNA binding region (Gar1) | Gar1/Naf1 RNA binding region | Gar1 is a small nucleolar RNP that is required for pre-mRNA processing and pseudouridylation [1]. It is co-immunoprecipitated with the H/ACA families of snoRNAs. This family represents the conserved central region of Gar1. This region is necessary an ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038664 | H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain | Homologous Superfamily | |
IPR007504 | H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 | Family | |
IPR040309 | H/ACA ribonucleoprotein complex non-core subunit Naf1 | Family | |
IPR009000 | Translation protein, beta-barrel domain superfamily | Homologous Superfamily |