2R7C | pdb_00002r7c

Crystallographic and biochemical analysis of rotavirus NSP2 with nucleotides reveals an NDP kinase like activity

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2r7ca1	Alpha and beta proteins (a+b)	HIT-like	Rotavirus NSP2 fragment, C-terminal domain	Rotavirus NSP2 fragment, C-terminal domain	Rotavirus NSP2 fragment, C-terminal domain	(Simian 11 rotavirus (serotype 3 / strain SA11-Ramig) ) [TaxId: 36435 ],	SCOPe (2.08)
A	d2r7ca2	Alpha and beta proteins (a+b)	Rotavirus NSP2 fragment, N-terminal domain	Rotavirus NSP2 fragment, N-terminal domain	Rotavirus NSP2 fragment, N-terminal domain	Rotavirus NSP2 fragment, N-terminal domain	(Simian 11 rotavirus (serotype 3 / strain SA11-Ramig) ) [TaxId: 36435 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Rotavirus NSP2 fragment, C-terminal domain	8024231	4002507	SCOP2 (2022-06-29)
A	SCOP2 Family	Rotavirus NSP2 fragment, N-terminal domain	8024232	4002816	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Rotavirus NSP2 fragment, C-terminal domain	8036610	3001351	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Rotavirus NSP2 fragment, N-terminal domain	8036611	3001787	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Rota_NS35_C	e2r7cA1	A: a+b three layers	X: HIT-like	H: HIT-related (From Topology)	T: HIT-related	F: Rota_NS35_C	ECOD (1.6)
A	Rota_NS35_N	e2r7cA2	A: a+b complex topology	X: Rotavirus NSP2 fragment, N-terminal domain (From Topology)	H: Rotavirus NSP2 fragment, N-terminal domain (From Topology)	T: Rotavirus NSP2 fragment, N-terminal domain	F: Rota_NS35_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.90.1400.10	Alpha Beta	Alpha-Beta Complex	Rotavirus NSP2 fragment, N-terminal domain	Rotavirus NSP2 fragment, N-terminal domain	CATH (4.3.0)
A	3.30.428.20	Alpha Beta	2-Layer Sandwich	HIT family, subunit A	Rotavirus NSP2 fragment, C-terminal domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Non-structural RNA-binding protein 35	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity RNA binding nucleic acid binding nucleobase-containing compound kinase activity kinase activity transferase activity phosphotransferase activity, phosphate group as acceptor nucleoside diphosphate kinase activity transferase activity, transferring phosphorus-containing groups cation binding metal ion binding	viral genome replication viral process viral life cycle	host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR024068	Rotavirus NSP2, N-terminal	Homologous Superfamily
A	IPR003668	Rotavirus non-structural protein 2	Family
A	IPR048573	Rotavirus non-structural protein 35, N-terminal domain	Domain
A	IPR048306	Rotavirus non-structural protein 35, C-terminal domain	Domain
A	IPR024076	Rotavirus NSP2, C-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.