2R3Z | pdb_00002r3z

Crystal structure of mouse IP-10

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2r3za1	Alpha and beta proteins (a+b)	IL8-like	Interleukin 8-like chemokines	Interleukin 8-like chemokines	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d2r3za2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
B	d2r3zb1	Alpha and beta proteins (a+b)	IL8-like	Interleukin 8-like chemokines	Interleukin 8-like chemokines	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
B	d2r3zb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
C	d2r3zc_	Alpha and beta proteins (a+b)	IL8-like	Interleukin 8-like chemokines	Interleukin 8-like chemokines	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
D	d2r3zd_	Alpha and beta proteins (a+b)	IL8-like	Interleukin 8-like chemokines	Interleukin 8-like chemokines	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Interleukin 8-like chemokines	8062214	4000912	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Interleukin 8-like chemokines	8062215	3001955	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Interleukin 8-like chemokines	8062215	3001955	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Interleukin 8-like chemokines	8062215	3001955	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Interleukin 8-like chemokines	8062215	3001955	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Methyltransf_2	e2r3zA1	A: a/b three-layered sandwiches	X: Profilin-like	H: sensor domains	T: sensor domains	F: Methyltransf_2	ECOD (v294.1)
B	Ras	e2r3zB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Ras	ECOD (v294.1)
C	Ras	e2r3zC1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Ras	ECOD (v294.1)
D	Ras	e2r3zD1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Ras	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)
B	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)
C	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)
D	2.40.50.40	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00048	Small cytokines (intecrine/chemokine), interleukin-8 like (IL8)	Small cytokines (intecrine/chemokine), interleukin-8 like	Includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity. Structure contains two highly conserved disulfide bonds.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Small-inducible cytokine B10	binding molecular function activator activity signaling receptor binding G protein-coupled receptor binding signaling receptor activator activity protein binding cytokine receptor binding chemokine activity molecular function regulator activity cytokine activity signaling receptor regulator activity chemokine receptor binding receptor ligand activity CXCR chemokine receptor binding binding molecular function activator activity signaling receptor binding G protein-coupled receptor binding signaling receptor activator activity protein binding cytokine receptor binding chemokine activity molecular function regulator activity cytokine activity signaling receptor regulator activity chemokine receptor binding receptor ligand activity CXCR chemokine receptor binding CXCR3 chemokine receptor binding chemoattractant activity heparin binding glycosaminoglycan binding carbohydrate derivative binding sulfur compound binding	response to peptide response to stimulus response to chemical cellular response to interleukin-17 response to interleukin-17 response to cytokine cellular response to cytokine stimulus immune response immune system process developmental process regulation of biological process regulation of cellular process regulation of developmental process cellular developmental process response to peptide response to stimulus response to chemical cellular response to interleukin-17 response to interleukin-17 response to cytokine cellular response to cytokine stimulus immune response immune system process developmental process regulation of biological process regulation of cellular process regulation of developmental process cellular developmental process negative regulation of developmental process biological regulation negative regulation of biological process regulation of cell differentiation muscle structure development negative regulation of myoblast differentiation cell differentiation anatomical structure development negative regulation of cellular process regulation of myoblast differentiation cellular process negative regulation of cell differentiation myoblast differentiation cell chemotaxis cellular response to stimulus chemotaxis neutrophil chemotaxis response to external stimulus neutrophil migration granulocyte migration leukocyte migration cellular response to chemical stimulus taxis granulocyte chemotaxis myeloid leukocyte migration cell migration cell motility leukocyte chemotaxis locomotion cell surface receptor signaling pathway signaling response to chemokine cytokine-mediated signaling pathway cellular response to chemokine chemokine-mediated signaling pathway cell communication G protein-coupled receptor signaling pathway signal transduction biological process involved in interspecies interaction between organisms response to lipid response to other organism cellular response to lipopolysaccharide response to oxygen-containing compound cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound response to biotic stimulus cellular response to biotic stimulus response to bacterium cellular response to lipid response to external biotic stimulus response to molecule of bacterial origin regulation of apoptotic process apoptotic process regulation of programmed cell death cell death programmed cell death multicellular organismal process epithelium development endothelium development tube development morphogenesis of an endothelium morphogenesis of an epithelium endothelial tube morphogenesis tissue development regulation of endothelial tube morphogenesis tissue morphogenesis anatomical structure morphogenesis multicellular organism development tube morphogenesis regulation of morphogenesis of an epithelium epithelial tube morphogenesis regulation of anatomical structure morphogenesis adenylate cyclase-activating G protein-coupled receptor signaling pathway adenylate cyclase-modulating G protein-coupled receptor signaling pathway cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation positive regulation of biological process positive regulation of cellular process regulation of syncytium formation by plasma membrane fusion regulation of cellular component organization cell-cell fusion negative regulation of syncytium formation by plasma membrane fusion muscle cell differentiation myotube differentiation cellular component organization syncytium formation cellular component organization or biogenesis negative regulation of cellular component organization myoblast fusion regulation of myoblast fusion negative regulation of myoblast fusion syncytium formation by plasma membrane fusion anatomical structure formation involved in morphogenesis striated muscle cell differentiation regulation of cell motility regulation of T cell chemotaxis regulation of response to external stimulus lymphocyte chemotaxis regulation of lymphocyte migration regulation of lymphocyte chemotaxis regulation of cell migration T cell chemotaxis regulation of immune system process regulation of mononuclear cell migration regulation of leukocyte chemotaxis regulation of leukocyte migration lymphocyte migration regulation of chemotaxis regulation of response to stimulus regulation of locomotion regulation of T cell migration mononuclear cell migration T cell migration defense response defense response to symbiont defense response to virus defense response to other organism response to stress innate immune response antiviral innate immune response response to virus positive regulation of monocyte chemotaxis positive regulation of locomotion positive regulation of chemotaxis positive regulation of cell migration regulation of monocyte chemotaxis positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of cell motility positive regulation of mononuclear cell migration positive regulation of immune system process positive regulation of leukocyte migration positive regulation of leukocyte chemotaxis monocyte chemotaxis humoral immune response antimicrobial humoral response antimicrobial humoral immune response mediated by antimicrobial peptide positive regulation of lymphocyte migration positive regulation of T cell migration disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism cell killing regulation of calcium ion transport regulation of localization positive regulation of cation transmembrane transport positive regulation of calcium ion transport transport monoatomic ion transmembrane transport regulation of monoatomic ion transmembrane transport calcium ion transport metal ion transport regulation of calcium ion transmembrane transport monoatomic cation transmembrane transport localization positive regulation of monoatomic ion transport positive regulation of calcium ion transmembrane transport positive regulation of transmembrane transport monoatomic ion transport positive regulation of monoatomic ion transmembrane transport positive regulation of release of sequestered calcium ion into cytosol monoatomic cation transport regulation of metal ion transport calcium ion transmembrane import into cytosol regulation of transport regulation of release of sequestered calcium ion into cytosol regulation of monoatomic ion transport establishment of localization transmembrane transport release of sequestered calcium ion into cytosol regulation of transmembrane transport positive regulation of transport regulation of monoatomic cation transmembrane transport calcium ion transmembrane transport inflammatory response angiogenesis regulation of vasculature development regulation of multicellular organismal process system development blood vessel development regulation of multicellular organismal development blood vessel morphogenesis negative regulation of blood vessel morphogenesis negative regulation of angiogenesis vasculature development circulatory system development negative regulation of vasculature development regulation of angiogenesis negative regulation of multicellular organismal process cellular response to virus endothelial cell activation cell activation	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR001811	Chemokine interleukin-8-like domain	Domain
A, B, C, D	IPR036048	Chemokine interleukin-8-like superfamily	Homologous Superfamily
A, B, C, D	IPR001089	CXC chemokine	Family
A, B, C, D	IPR039809	Chemokine beta/gamma/delta	Family
A, B, C, D	IPR033899	CXC Chemokine domain	Domain
A, B, C, D	IPR018048	CXC chemokine, conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.