2PSB

Crystal structure of YerB protein from Bacillus subtilis. NorthEast Structural Genomics target SR586

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2psba1	Alpha and beta proteins (a/b)	YerB-like	YerB-like	YerB-like	Uncharacterized protein YerB	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YerB-like	8023648	4002444	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YerB-like	8036028	3001246	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF3048_C	e2psbA1	A: beta sandwiches	X: C-terminal domain in YerB-like proteins (From Topology)	H: C-terminal domain in YerB-like proteins (From Topology)	T: C-terminal domain in YerB-like proteins	F: DUF3048_C	ECOD (1.6)
A	DUF3048	e2psbA2	A: mixed a+b and a/b	X: N-terminal domain in YerB-like proteins (From Topology)	H: N-terminal domain in YerB-like proteins (From Topology)	T: N-terminal domain in YerB-like proteins	F: DUF3048	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.50.90.10	Alpha Beta	3-Layer(bba) Sandwich	YerB-like fold	YerB-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF11258	Protein of unknown function (DUF3048) N-terminal domain (DUF3048)	Protein of unknown function (DUF3048) N-terminal domain	Some members in this bacterial family of proteins are annotated as YerB. However currently no function is known. This entry represents the N-terminal domain.	Domain
A	PF17479	Protein of unknown function (DUF3048) C-terminal domain (DUF3048_C)	Protein of unknown function (DUF3048) C-terminal domain	Some members in this bacterial family of proteins are annotated as YerB. However currently no function is known. This entry represents the C-terminal domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	YerB protein	-	-	cell periphery plasma membrane membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR035328	DUF3048, C-terminal domain	Domain
A	IPR023158	YerB-like superfamily	Homologous Superfamily
A	IPR021416	DUF3048, N-terminal	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.