2PIG | pdb_00002pig

Crystal structure of ydcK from Salmonella cholerae at 2.38 A resolution. Northeast Structural Genomics target SCR6

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2pigb1	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	YdcK-like	automated matches	(Salmonella enterica subsp. enterica serovar Paratyphi A ) [TaxId: 54388 ],	SCOPe (2.08)
B	d2pigb2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Salmonella enterica subsp. enterica serovar Paratyphi A ) [TaxId: 54388 ],	SCOPe (2.08)
A	d2piga_	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	YdcK-like	automated matches	(Salmonella enterica subsp. enterica serovar Paratyphi A ) [TaxId: 54388 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8040693	3001804	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8040693	3001804	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Biopterin_H	e2pigB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Biopterin_H	ECOD (v294.1)
A	Biopterin_H	e2pigA1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Biopterin_H	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Putative transferase	transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups acyltransferase activity cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR050065	Bifunctional protein GlmU-like	Family
A, B	IPR011004	Trimeric LpxA-like superfamily	Homologous Superfamily
A, B	IPR048014	YdcK-like	Family
A, B	IPR040831	YdcK Beta solenoid repeat	Repeat

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.