2P8I | pdb_00002p8i

Crystal structure of putative dioxygenase (YP_555069.1) from Burkholderia xenovorans LB400 at 1.40 A resolution

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd2p8id2 Alpha and beta proteins (a+b) Ferredoxin-like DOPA-like DOPA dioxygenase-like Putative dioxygenase BxeB0224 (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Dd2p8id3 Artifacts Tags Tags Tags N-terminal Tags (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Cd2p8ic2 Alpha and beta proteins (a+b) Ferredoxin-like DOPA-like DOPA dioxygenase-like Putative dioxygenase BxeB0224 (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Cd2p8ic3 Artifacts Tags Tags Tags N-terminal Tags (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Bd2p8ib2 Alpha and beta proteins (a+b) Ferredoxin-like DOPA-like DOPA dioxygenase-like Putative dioxygenase BxeB0224 (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Bd2p8ib3 Artifacts Tags Tags Tags N-terminal Tags (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Ad2p8ia2 Alpha and beta proteins (a+b) Ferredoxin-like DOPA-like DOPA dioxygenase-like Putative dioxygenase BxeB0224 (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Ad2p8ia3 Artifacts Tags Tags Tags N-terminal Tags (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyDOPA-like 8043791 3001314 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyDOPA-like 8043791 3001314 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyDOPA-like 8043791 3001314 SCOP2B (2022-06-29)
ASCOP2 FamilyDOPA dioxygenase-like 8031413 4003703 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyDOPA-like 8043791 3001314 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DRNase_P_Rpp14e2p8iD1 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: Rpp14/Pop5-likeT: Rpp14/Pop5-likeF: RNase_P_Rpp14ECOD (v294.1)
CRNase_P_Rpp14e2p8iC1 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: Rpp14/Pop5-likeT: Rpp14/Pop5-likeF: RNase_P_Rpp14ECOD (v294.1)
BRNase_P_Rpp14e2p8iB1 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: Rpp14/Pop5-likeT: Rpp14/Pop5-likeF: RNase_P_Rpp14ECOD (v294.1)
ADOPA_dioxygene2p8iA1 A: a+b two layersX: Alpha-beta plaitsH: DOPA dioxygenase-likeT: DOPA dioxygenase-likeF: DOPA_dioxygenECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.30.70.1240 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits DOPA-like domainsCATH (4.3.0)
C3.30.70.1240 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits DOPA-like domainsCATH (4.3.0)
B3.30.70.1240 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits DOPA-like domainsCATH (4.3.0)
A3.30.70.1240 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits DOPA-like domainsCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF08883Dopa 4,5-dioxygenase family (DOPA_dioxygen)Dopa 4,5-dioxygenase familyThis family of proteins are related to Swiss:P87064 a DOPA 4,5-dioxygenase that is involved in synthesis of betalain. DOPA-dioxygenase is the key enzyme involved in betalain biosynthesis. It converts 3,4-dihydroxyphenylalanine to betalamic acid, a ye ...This family of proteins are related to Swiss:P87064 a DOPA 4,5-dioxygenase that is involved in synthesis of betalain. DOPA-dioxygenase is the key enzyme involved in betalain biosynthesis. It converts 3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Putative dioxygenase - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR023389DOPA-like superfamilyHomologous Superfamily
A, B, C, D
IPR014980Dopa 4,5-dioxygenaseFamily