Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd2p22b_ All alpha proteins Long alpha-hairpin Endosomal sorting complex assembly domain VPS28 N-terminal domain automated matches baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyEndosomal sorting complex assembly domain-like8040587 3000610 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyEndosomal sorting complex assembly domain-like8040590 3000610 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyEndosomal sorting complex assembly domain-like8040568 3000610 SCOP2B (2022-06-29)
DSCOP2 FamilyMvb12-like8044875 4004187 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyMvb12-like8053601 3002211 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AVps23_coree2p22A1 A: alpha bundlesX: Long alpha-hairpinH: Endosomal sorting complex assembly domains (From Topology)T: Endosomal sorting complex assembly domainsF: Vps23_coreECOD (1.6)
BVPS28_Ne2p22B2 A: alpha bundlesX: Long alpha-hairpinH: Endosomal sorting complex assembly domains (From Topology)T: Endosomal sorting complex assembly domainsF: VPS28_NECOD (1.6)
CMod_re2p22C1 A: alpha bundlesX: Long alpha-hairpinH: Endosomal sorting complex assembly domains (From Topology)T: Endosomal sorting complex assembly domainsF: Mod_rECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B1.20.1440.200 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) Vps28 N-terminal domainCATH (4.3.0)
D6.10.250.1830 Special Helix non-globular Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF09454Vps23 core domain (Vps23_core)Vps23 core domainESCRT complexes form the main machinery driving protein sorting from endosomes to lysosomes. The core domain of the Vps23 subunit of the heterotrimeric ESCRT-I complex is a helical hairpin sandwiched in a fan-like formation between two other helical ...ESCRT complexes form the main machinery driving protein sorting from endosomes to lysosomes. The core domain of the Vps23 subunit of the heterotrimeric ESCRT-I complex is a helical hairpin sandwiched in a fan-like formation between two other helical hairpins from Vps28 (Pfam:PF03997) and Vps37. Vps23 gives ESCRT-I complex its stability [1].
Domain
PF03997VPS28 protein (VPS28)VPS28 protein- Family
PF07200Modifier of rudimentary (Mod(r)) protein (Mod_r)Modifier of rudimentary (Mod(r)) proteinThis family represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acid ...This family represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [1], and both of these regions are represented in this family. Members of this family include the Vps37 subunit of the endosomal sorting complex ESCRT-I, a complex involved in recruiting transport machinery for protein sorting at the multivesicular body (MVB). The yeast ESCRT-I complex consists of three proteins (Vps23, Vps28 and Vps37). The mammalian homologue of Vps37 interacts with Tsg101 (Pfam: PF05743) through its mod(r) domain and its function is essential for lysosomal sorting of EGF receptors [2].
Domain
PF09452ESCRT-I subunit Mvb12 (Mvb12)ESCRT-I subunit Mvb12The endosomal sorting complex required for transport (ESCRT) complexes play a critical role in receptor down-regulation and retroviral budding. A new component of the ESCRT-I complex was identified [1], multivesicular body sorting factor of 12 kD (Mv ...The endosomal sorting complex required for transport (ESCRT) complexes play a critical role in receptor down-regulation and retroviral budding. A new component of the ESCRT-I complex was identified [1], multivesicular body sorting factor of 12 kD (Mvb12), which binds to the coiled-coil domain of the ESCRT-I subunit vacuolar protein sorting 23 (Vps23) [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Suppressor protein STP22 of temperature-sensitive alpha-factor receptor and arginine permease
Vacuolar protein sorting-associated protein 28
Protein SRN2-
Hypothetical 12.0 kDa protein in ADE3-SER2 intergenic region