2OX6 | pdb_00002ox6

Crystal structure of gene product SO3848 from Shewanella oneidensis MR-1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d2ox6d_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	YdiL-like	Hypothetical protein SO3848	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
C	d2ox6c_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	YdiL-like	Hypothetical protein SO3848	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
B	d2ox6b_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	YdiL-like	Hypothetical protein SO3848	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
A	d2ox6a1	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	YdiL-like	Hypothetical protein SO3848	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8035225	3000119	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8035225	3000119	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8035225	3000119	SCOP2B (2022-06-29)
A	SCOP2 Family	YdiL-like	8022845	4002426	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	lambda C1 repressor DNA-binding domain-like	8035225	3000119	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	HTHP	e2ox6D1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
C	HTHP	e2ox6C1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
B	HTHP	e2ox6B1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
A	DUF4447	e2ox6A1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: DUF4447	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.10.3100.10	Mainly Alpha	Orthogonal Bundle	Putative cytoplasmic protein	Putative cytoplasmic protein	CATH (4.3.0)
C	1.10.3100.10	Mainly Alpha	Orthogonal Bundle	Putative cytoplasmic protein	Putative cytoplasmic protein	CATH (4.3.0)
B	1.10.3100.10	Mainly Alpha	Orthogonal Bundle	Putative cytoplasmic protein	Putative cytoplasmic protein	CATH (4.3.0)
A	1.10.3100.10	Mainly Alpha	Orthogonal Bundle	Putative cytoplasmic protein	Putative cytoplasmic protein	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Hypothetical protein SO3848	DNA binding binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR027909	Protein of unknown function DUF4447	Family
A, B, C, D	IPR027910	YdiL domain superfamily	Homologous Superfamily
A, B, C, D	IPR010982	Lambda repressor-like, DNA-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.