2ONK | pdb_00002onk

ABC transporter ModBC in complex with its binding protein ModA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J	d2onkj2	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Phosphate binding protein-like	Molybdate-binding protein, ModA	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
J	d2onkj3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
I [auth E]	d2onke1	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Phosphate binding protein-like	Molybdate-binding protein, ModA	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
H [auth I]	d2onki1	Membrane and cell surface proteins and peptides	MetI-like	MetI-like	MetI-like	Molybdate/tungstate transport system permease protein WtpB (ModB)	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
G [auth H]	d2onkh1	Membrane and cell surface proteins and peptides	MetI-like	MetI-like	MetI-like	Molybdate/tungstate transport system permease protein WtpB (ModB)	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
F [auth D]	d2onkd1	Membrane and cell surface proteins and peptides	MetI-like	MetI-like	MetI-like	Molybdate/tungstate transport system permease protein WtpB (ModB)	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
E [auth C]	d2onkc1	Membrane and cell surface proteins and peptides	MetI-like	MetI-like	MetI-like	Molybdate/tungstate transport system permease protein WtpB (ModB)	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
D [auth G]	d2onkg_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	ABC transporter ATPase domain-like	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
C [auth F]	d2onkf_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	ABC transporter ATPase domain-like	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
B	d2onkb_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	ABC transporter ATPase domain-like	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
A	d2onka1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	ABC transporter ATPase domain-like	Molybdate/tungstate import ATP-binding protein WtpC (ModC)	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	Type 2 solute binding protein-like	8035165	3000083	SCOP2B (2022-06-29)
I [auth E]	SCOP2B Superfamily	Type 2 solute binding protein-like	8035165	3000083	SCOP2B (2022-06-29)
H [auth I]	SCOP2B Superfamily	MetI-like	8058244	3001716	SCOP2B (2022-06-29)
G [auth H]	SCOP2B Superfamily	MetI-like	8058244	3001716	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	MetI-like	8058244	3001716	SCOP2B (2022-06-29)
E [auth C]	SCOP2 Family	Binding-protein-dependent transport system inner membrane component (MetI-like)	8058243	4002760	SCOP2 (2022-06-29)
E [auth C]	SCOP2 Superfamily	MetI-like	8058244	3001716	SCOP2 (2022-06-29)
D [auth G]	SCOP2B Superfamily	ABC transporter-like P-loop ATPases	8058242	3002020	SCOP2B (2022-06-29)
C [auth F]	SCOP2B Superfamily	ABC transporter-like P-loop ATPases	8058242	3002020	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ABC transporter-like P-loop ATPases	8058242	3002020	SCOP2B (2022-06-29)
A	SCOP2 Family	ABC transporter ATPase domain-like	8058241	4003976	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	ABC transporter-like P-loop ATPases	8058242	3002020	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	LysR_substrate	e2onkJ1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: LysR_substrate	ECOD (v294.1)
I [auth E]	LysR_substrate	e2onkE1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: LysR_substrate	ECOD (v294.1)
H [auth I]	Cation_efflux	e2onkI1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: Cation_efflux	ECOD (v294.1)
G [auth H]	Cation_efflux	e2onkH1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: Cation_efflux	ECOD (v294.1)
F [auth D]	Cation_efflux	e2onkD1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: Cation_efflux	ECOD (v294.1)
E [auth C]	Cation_efflux	e2onkC1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: Cation_efflux	ECOD (v294.1)
D [auth G]	Helicase_C	e2onkG1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Helicase_C	ECOD (v294.1)
C [auth F]	Helicase_C	e2onkF1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Helicase_C	ECOD (v294.1)
B	Helicase_C	e2onkB1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Helicase_C	ECOD (v294.1)
A	ABC_tran, AAA_21	e2onkA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: ABC_tran, AAA_21	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)
I [auth E]	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)
H [auth I]	1.10.3720.10	Mainly Alpha	Orthogonal Bundle	MetI-like fold	MetI-like	CATH (4.3.0)
G [auth H]	1.10.3720.10	Mainly Alpha	Orthogonal Bundle	MetI-like fold	MetI-like	CATH (4.3.0)
F [auth D]	1.10.3720.10	Mainly Alpha	Orthogonal Bundle	MetI-like fold	MetI-like	CATH (4.3.0)
E [auth C]	1.10.3720.10	Mainly Alpha	Orthogonal Bundle	MetI-like fold	MetI-like	CATH (4.3.0)
D [auth G]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
C [auth F]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
B	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
A	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
I [auth E], J	PF01547	Bacterial extracellular solute-binding protein (SBP_bac_1)	Bacterial extracellular solute-binding protein	-	Family
E [auth C], F [auth D], G [auth H], H [auth I]	PF00528	Binding-protein-dependent transport system inner membrane component (BPD_transp_1)	Binding-protein-dependent transport system inner membrane component	-	Family
A, B, C [auth F], D [auth G]	PF00005	ABC transporter (ABC_tran)	ABC transporter	ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ...	ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain Pfam:PF00664. These four domains may belong to a single polypeptide as in Swiss:P13569, or belong in different polypeptide chains.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth E], J	Molybdate/tungstate binding protein	molybdate ion binding ion binding binding anion binding small molecule binding tungstate binding cation binding metal ion binding	localization transport establishment of localization molybdate ion transport inorganic anion transport	cell periphery cellular anatomical structure plasma membrane membrane
E [auth C], F [auth D], G [auth H], H [auth I]	Molybdate/tungstate ABC transporter, permease protein	-	transmembrane transport localization transport cellular process establishment of localization	cell periphery cellular anatomical structure plasma membrane membrane
A, B, C [auth F], D [auth G]	Molybdate/tungstate ABC transporter, ATP-binding protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity ABC-type transporter activity active transmembrane transporter activity primary active transmembrane transporter activity ABC-type tungstate transporter activity ATPase-coupled transmembrane transporter activity transporter activity transmembrane transporter activity	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I [auth E], J	IPR050682	Molybdate-binding protein ModA/tungstate-binding	Family
I [auth E], J	IPR022498	Tungstate ABC transporter, substrate-binding protein WtpA	Family
E [auth C], F [auth D], G [auth H], H [auth I]	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	Domain
E [auth C], F [auth D], G [auth H], H [auth I]	IPR035906	MetI-like superfamily	Homologous Superfamily
E [auth C], F [auth D], G [auth H], H [auth I]	IPR053405	Molybdate/Tungstate ABC Transporter Permease	Family
A, B, C [auth F], D [auth G]	IPR003593	AAA+ ATPase domain	Domain
A, B, C [auth F], D [auth G]	IPR017871	ABC transporter-like, conserved site	Conserved Site
A, B, C [auth F], D [auth G]	IPR050093	ABC Transporter, Small Molecule Importer	Family
A, B, C [auth F], D [auth G]	IPR003439	ABC transporter-like, ATP-binding domain	Domain
A, B, C [auth F], D [auth G]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C [auth F], D [auth G], E [auth C] A, B, C [auth F], D [auth G], E [auth C], F [auth D], G [auth H], H [auth I], I [auth E], J	OPM	Transmembrane	Alpha-helical polytopic	ABC transporters	Binding-protein-dependent transport system

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C [auth F], D [auth G], E [auth C] A, B, C [auth F], D [auth G], E [auth C], F [auth D], G [auth H], H [auth I], I [auth E], J	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C [auth F], D [auth G], E [auth C] A, B, C [auth F], D [auth G], E [auth C], F [auth D], G [auth H], H [auth I], I [auth E], J	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C [auth F], D [auth G], E [auth C] A, B, C [auth F], D [auth G], E [auth C], F [auth D], G [auth H], H [auth I], I [auth E], J	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	ATP Binding Cassette (ABC) Transporters	Molybdate Transporter ModB₂C₂ Complexed with ModA

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.