2OGF | pdb_00002ogf

Crystal structure of protein MJ0408 from Methanococcus jannaschii, Pfam DUF372

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d2ogfd1	Alpha and beta proteins (a+b)	MK0786-like	MK0786-like	automated matches	automated matches	(Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
D	d2ogfd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
C	d2ogfc1	Alpha and beta proteins (a+b)	MK0786-like	MK0786-like	automated matches	automated matches	(Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
C	d2ogfc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
B	d2ogfb1	Alpha and beta proteins (a+b)	MK0786-like	MK0786-like	automated matches	automated matches	(Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
B	d2ogfb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
A	d2ogfa1	Alpha and beta proteins (a+b)	MK0786-like	MK0786-like	automated matches	automated matches	(Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
A	d2ogfa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	MptD-like	8004491	3000167	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	MptD-like	8004491	3000167	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	MptD-like	8004491	3000167	SCOP2B (2022-06-29)
A	SCOP2 Family	MptD-like	8004490	4000388	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	MptD-like	8004491	3000167	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	ACR_tran	e2ogfD1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (develop294)
C	ACR_tran	e2ogfC1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (develop294)
B	ACR_tran	e2ogfB1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (develop294)
A	ACPS	e2ogfA1	A: alpha bundles	X: Profilin-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ACPS	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.30.1300.20	Alpha Beta	2-Layer Sandwich	Pantoate--beta-alanine Ligase	Chain: A,domain 2	CATH (4.3.0)
C	3.30.1300.20	Alpha Beta	2-Layer Sandwich	Pantoate--beta-alanine Ligase	Chain: A,domain 2	CATH (4.3.0)
B	3.30.1300.20	Alpha Beta	2-Layer Sandwich	Pantoate--beta-alanine Ligase	Chain: A,domain 2	CATH (4.3.0)
A	3.30.1300.20	Alpha Beta	2-Layer Sandwich	Pantoate--beta-alanine Ligase	Chain: A,domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF04038	Dihydroneopterin aldolase (DHNA)	Dihydroneopterin aldolase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Hypothetical protein MJ0408	dihydroneopterin aldolase activity lyase activity catalytic activity carbon-carbon lyase activity aldehyde-lyase activity	tetrahydromethanopterin biosynthetic process methanopterin-containing compound biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process pteridine-containing compound biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process pteridine-containing compound metabolic process phosphorus metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036839	7,8-dihydroneopterin aldolase (MptD) superfamily	Homologous Superfamily
A, B, C, D	IPR007181	Dihydroneopterin aldolase MtpD, C-terminal domain	Domain
A, B, C, D	IPR027508	7,8-dihydroneopterin aldolase, MptD	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.