2OBS | pdb_00002obs

Crystal Structures of P Domain of Norovirus VA387 in Complex with Blood Group Trisaccharides type A

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACalici_coat_Ce2obsA1 A: alpha bundlesX: C-terminal additional helical subdomain in reovirus polymerase lambda3H: C-terminal additional helical subdomain in reovirus polymerase lambda3T: C-terminal additional helical subdomain in reovirus polymerase lambda3F: Calici_coat_CECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.40.510.10 Mainly Beta Beta Barrel Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA virusesCATH (4.3.0)
A2.40.30.120 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Capsid protein- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR029053Viral coat protein subunitHomologous Superfamily
IPR004005Calicivirus coat proteinDomain
IPR013643Calicivirus coat protein C-terminalDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain