Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8074458 3000850 SCOP2B (2022-06-29)
JSCOP2 FamilySubunit IX of photosystem I reaction centre PsaJ8074515 4002101 SCOP2 (2022-06-29)
JSCOP2 SuperfamilySubunit IX of photosystem I reaction centre PsaJ8074516 3000824 SCOP2 (2022-06-29)
LSCOP2B SuperfamilyPhotosystem I reaction center subunit XI PsaL8087178 3000870 SCOP2B (2022-06-29)
N [auth 1]SCOP2B SuperfamilyChlorophyll a-b binding protein8076986 3000343 SCOP2B (2022-06-29)
O [auth 2]SCOP2B SuperfamilyChlorophyll a-b binding protein8076998 3000343 SCOP2B (2022-06-29)
Q [auth 4]SCOP2B SuperfamilyChlorophyll a-b binding protein8077000 3000343 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8074470 3000850 SCOP2B (2022-06-29)
CSCOP2B Superfamily4Fe-4S ferredoxins8074478 3000020 SCOP2B (2022-06-29)
DSCOP2 FamilyPhotosystem I subunit PsaD8074487 4003498 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyPhotosystem I subunit PsaD8074488 3000951 SCOP2 (2022-06-29)
ESCOP2 FamilyPhotosystem I accessory protein E (PsaE)8074493 4001749 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyElectron transport accessory proteins8074494 3000325 SCOP2 (2022-06-29)
FSCOP2 FamilySubunit III of photosystem I reaction centre PsaF8074445 4002091 SCOP2 (2022-06-29)
FSCOP2 SuperfamilySubunit III of photosystem I reaction centre PsaF8074446 3000813 SCOP2 (2022-06-29)
HSCOP2B SuperfamilyPhotosystem I reaction centre subunit VI8102523 3002733 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
IPF00796e2o01I1 A: extended segmentsX: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)T: Subunit VIII of photosystem I reaction centre, PsaIF: PF00796ECOD (1.6)
APF00223e2o01A2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
APF00223e2o01A1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
JPF01701e2o01J1 A: extended segmentsX: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)T: Subunit IX of photosystem I reaction centre, PsaJF: PF01701ECOD (1.6)
LPF02605e2o01L1 A: alpha bundlesX: Photosystem I reaction center subunit XI, PsaL (From Topology)H: Photosystem I reaction center subunit XI, PsaL (From Topology)T: Photosystem I reaction center subunit XI, PsaLF: PF02605ECOD (1.6)
M [auth N]PF05479e2o01N1 A: extended segmentsX: Subunit N of Photosystem I reaction centre (From Topology)H: Subunit N of Photosystem I reaction centre (From Topology)T: Subunit N of Photosystem I reaction centreF: PF05479ECOD (1.6)
N [auth 1]PF00504e2o0111 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
O [auth 2]PF00504e2o0121 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
P [auth 3]PF00504e2o0131 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
Q [auth 4]PF00504e2o0141 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
BPF00223e2o01B2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
BPF00223e2o01B1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
CPF00037e2o01C1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF00037ECOD (1.6)
DPF02531e2o01D1 A: a+b two layersX: Photosystem I subunit PsaD (From Topology)H: Photosystem I subunit PsaD (From Topology)T: Photosystem I subunit PsaDF: PF02531ECOD (1.6)
EPF02427e2o01E1 A: beta barrelsX: SH3H: SH3T: SH3F: PF02427ECOD (1.6)
FPF02507e2o01F1 A: extended segmentsX: Subunit III of photosystem I reaction centre, PsaF (From Topology)H: Subunit III of photosystem I reaction centre, PsaF (From Topology)T: Subunit III of photosystem I reaction centre, PsaFF: PF02507ECOD (1.6)
GPF01241e2o01G1 A: alpha bundlesX: Photosystem I reaction center subunit X, PsaK (From Topology)H: Photosystem I reaction center subunit X, PsaK (From Topology)T: Photosystem I reaction center subunit X, PsaKF: PF01241ECOD (1.6)
HPF03244e2o01H1 A: extended segmentsX: Subunit VI of Photosystem I reaction centre (From Topology)H: Subunit VI of Photosystem I reaction centre (From Topology)T: Subunit VI of Photosystem I reaction centreF: PF03244ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (4.3.0)
J1.20.5.510 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Single helix binCATH (4.3.0)
L1.20.1240.10 Mainly Alpha Up-down Bundle Photosystem 1 Reaction Centre Subunit Xi Chain: LCATH (4.3.0)
M [auth N]1.20.5.740 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Single helix binCATH (4.3.0)
N [auth 1]1.10.3460.10 Mainly Alpha Orthogonal Bundle Chlorophyll a-b binding protein Chlorophyll a/b binding protein domainCATH (4.3.0)
O [auth 2]1.10.3460.10 Mainly Alpha Orthogonal Bundle Chlorophyll a-b binding protein Chlorophyll a/b binding protein domainCATH (4.3.0)
P [auth 3]1.10.3460.10 Mainly Alpha Orthogonal Bundle Chlorophyll a-b binding protein Chlorophyll a/b binding protein domainCATH (4.3.0)
Q [auth 4]1.10.3460.10 Mainly Alpha Orthogonal Bundle Chlorophyll a-b binding protein Chlorophyll a/b binding protein domainCATH (4.3.0)
B1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (4.3.0)
C3.30.70.20 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
D3.30.1470.10 Alpha Beta 2-Layer Sandwich Photosystem 1 Reaction Centre Subunit Ii Chain: DCATH (4.3.0)
E2.30.30.50 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)
F1.10.8.110 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
G1.10.286.40 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I Chain A, domain 1CATH (4.3.0)
H1.20.5.220 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
M [auth N]PF05479Photosystem I reaction centre subunit N (PSAN or PSI-N) (PsaN)Photosystem I reaction centre subunit N (PSAN or PSI-N)- Family
N [auth 1]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
O [auth 2]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
P [auth 3]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
Q [auth 4]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
PF146974Fe-4S dicluster domain (Fer4_21)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
PF02531PsaD (PsaD)PsaD- Family
PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1].Domain
PF02507Photosystem I reaction centre subunit III (PSI_PsaF)Photosystem I reaction centre subunit III- Family
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
PF03244Photosystem I reaction centre subunit VI (PSI_PsaH)Photosystem I reaction centre subunit VI- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Photosystem I reaction center subunit VIII-
Photosystem I P700 chlorophyll a apoprotein A1
Photosystem I reaction center subunit IX-
Photosystem I reaction center subunit psaK, chloroplast---
Photosystem I reaction center subunit XI, chloroplast-
M [auth N]Photosystem I-N subunit-
N [auth 1]AT3g54890
O [auth 2]Type II chlorophyll a/b binding protein from photosystem I
P [auth 3]PSI type III chlorophyll a/b-binding protein
Q [auth 4]PSI light-harvesting antenna chlorophyll a/b-binding protein
Photosystem I P700 chlorophyll a apoprotein A2
Photosystem I iron-sulfur center
Photosystem I reaction center subunit II, chloroplast-
Photosystem I reaction center subunit IV A, chloroplast
Photosystem I reaction center subunit III, chloroplast
Photosystem I reaction center subunit V, chloroplast-
Photosystem I reaction center subunit VI, chloroplast

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
IPR001302Photosystem I reaction centre subunit VIIIFamily
IPR006243Photosystem I PsaAFamily
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
IPR022980Photosystem I, reaction centre subunit XIFamily
IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
M [auth N]IPR008796Photosystem I reaction centre subunit N, chloroplasticFamily
M [auth N]IPR044907Photosystem I reaction centre subunit N superfamilyHomologous Superfamily
N [auth 1]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
N [auth 1]IPR022796Chlorophyll A-B binding proteinFamily
O [auth 2]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
O [auth 2]IPR022796Chlorophyll A-B binding proteinFamily
P [auth 3]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
P [auth 3]IPR022796Chlorophyll A-B binding proteinFamily
Q [auth 4]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
Q [auth 4]IPR022796Chlorophyll A-B binding proteinFamily
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR006244Photosystem I PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
IPR017491Photosystem I protein PsaCFamily
IPR003685Photosystem I PsaDFamily
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
IPR017494Photosystem I reaction center subunit VFamily
IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
IPR000549Photosystem I reaction center subunit V/PsaKFamily
IPR004928Photosystem I PsaH, reaction centre subunit VIFamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
MemProtMDAnnotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage