2NZX

Crystal Structure of alpha1,3-Fucosyltransferase with GDP

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2nzxa_	Alpha and beta proteins (a/b)	UDP-Glycosyltransferase/glycogen phosphorylase	UDP-Glycosyltransferase/glycogen phosphorylase	FucT-like	Alpha1,3-fucosyltransferase FucT	(Helicobacter pylori ) [TaxId: 210 ],	SCOPe (2.08)
B	d2nzxb_	Alpha and beta proteins (a/b)	UDP-Glycosyltransferase/glycogen phosphorylase	UDP-Glycosyltransferase/glycogen phosphorylase	FucT-like	Alpha1,3-fucosyltransferase FucT	(Helicobacter pylori ) [TaxId: 210 ],	SCOPe (2.08)
C	d2nzxc_	Alpha and beta proteins (a/b)	UDP-Glycosyltransferase/glycogen phosphorylase	UDP-Glycosyltransferase/glycogen phosphorylase	FucT-like	Alpha1,3-fucosyltransferase FucT	(Helicobacter pylori ) [TaxId: 210 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Type B glycosyltransferase-like	8034949	3001586	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Type B glycosyltransferase-like	8034949	3001586	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Type B glycosyltransferase-like	8034949	3001586	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Glyco_transf_10	e2nzxA2	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: Glyco_transf_10	ECOD (1.6)
A	EUF08618	e2nzxA1	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: EUF08618	ECOD (1.6)
B	Glyco_transf_10	e2nzxB2	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: Glyco_transf_10	ECOD (1.6)
B	EUF08618	e2nzxB1	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: EUF08618	ECOD (1.6)
C	Glyco_transf_10	e2nzxC2	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: Glyco_transf_10	ECOD (1.6)
C	EUF08618	e2nzxC1	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: EUF08618	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.11660	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycosyl transferase family 10, C-terminal domain	CATH (4.3.0)
A	3.40.50.11650	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycosyl transferase family 10, N-terminal domain	CATH (4.3.0)
B	3.40.50.11660	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycosyl transferase family 10, C-terminal domain	CATH (4.3.0)
B	3.40.50.11650	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycosyl transferase family 10, N-terminal domain	CATH (4.3.0)
C	3.40.50.11660	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycosyl transferase family 10, C-terminal domain	CATH (4.3.0)
C	3.40.50.11650	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycosyl transferase family 10, N-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF18025	Alpha-(1,3)-fucosyltransferase FucT N-terminal domain (FucT_N)	Alpha-(1,3)-fucosyltransferase FucT N-terminal domain	This is the N-terminal domain of the alpha chain found in Helicobacter pylori Fucosyltransferase protein which is involved in the production of Lewis x trisaccharide, a major component of lipopolysaccharide. The N-terminal domain contains the catalys ...	This is the N-terminal domain of the alpha chain found in Helicobacter pylori Fucosyltransferase protein which is involved in the production of Lewis x trisaccharide, a major component of lipopolysaccharide. The N-terminal domain contains the catalyst base, Glu-95 which is equivalent to the Asp-100 of other members of the glycosyltransferases-B family. The domain contains the pocket where LacNAc binds. The domain is composed of 2-10 heptad repeats and a conserved N-terminal alpha-beta-alpha motif which has little sequence similarity to the conserved N-terminal motif in other glycosyltransferases [1].	Domain
A, B, C	PF00852	Glycosyltransferase family 10 (fucosyltransferase) C-term (Glyco_transf_10)	Glycosyltransferase family 10 (fucosyltransferase) C-term	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Alpha1,3-fucosyltransferase	fucosyltransferase activity 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase activity glycosyltransferase activity alpha-(1->3)-fucosyltransferase activity transferase activity hexosyltransferase activity catalytic activity binding fucose binding monosaccharide binding carbohydrate binding small molecule binding identical protein binding protein binding	lipopolysaccharide biosynthetic process carbohydrate derivative biosynthetic process carbohydrate metabolic process polysaccharide biosynthetic process cellular biosynthetic process carbohydrate biosynthetic process cellular metabolic process liposaccharide metabolic process lipid biosynthetic process carbohydrate derivative metabolic process primary metabolic process macromolecule biosynthetic process lipopolysaccharide metabolic process polysaccharide metabolic process organic substance metabolic process lipopolysaccharide biosynthetic process carbohydrate derivative biosynthetic process carbohydrate metabolic process polysaccharide biosynthetic process cellular biosynthetic process carbohydrate biosynthetic process cellular metabolic process liposaccharide metabolic process lipid biosynthetic process carbohydrate derivative metabolic process primary metabolic process macromolecule biosynthetic process lipopolysaccharide metabolic process polysaccharide metabolic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process macromolecule metabolic process lipid metabolic process organonitrogen compound metabolic process organonitrogen compound biosynthetic process glycoprotein biosynthetic process glycoprotein metabolic process protein glycosylation glycosylation macromolecule modification macromolecule glycosylation protein metabolic process protein modification process fucosylation	membrane cellular anatomical entity intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR016646	Alpha-(1, 3)-fucosyltransferase/alpha-(1, 4)-fucosyltransferase, Helicobacter	Family
A, B, C	IPR001503	Glycosyl transferase family 10	Family
A, B, C	IPR038577	GT10-like, C-terminal domain superfamily	Homologous Superfamily
A, B, C	IPR041058	Alpha-(1,3)-fucosyltransferase FucT, N-terminal	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.