2NYH

Crystal structure of putative dioxygenase (YP_555069.1) from Burkholderia Xenovorans LB400 at 1.70 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2nyha1	Alpha and beta proteins (a+b)	Ferredoxin-like	DOPA-like	DOPA dioxygenase-like	Putative dioxygenase BxeB0224	(Paraburkholderia xenovorans ) [TaxId: 36873 ],	SCOPe (2.08)
A	d2nyha2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Paraburkholderia xenovorans ) [TaxId: 36873 ],	SCOPe (2.08)
B	d2nyhb_	Alpha and beta proteins (a+b)	Ferredoxin-like	DOPA-like	DOPA dioxygenase-like	Putative dioxygenase BxeB0224	(Paraburkholderia xenovorans ) [TaxId: 36873 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	DOPA-like	8043791	3001314	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	DOPA-like	8043791	3001314	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF08883	e2nyhA1	A: a+b two layers	X: Alpha-beta plaits	H: DOPA dioxygenase-like (From Topology)	T: DOPA dioxygenase-like	F: PF08883	ECOD (1.6)
B	PF08883	e2nyhB1	A: a+b two layers	X: Alpha-beta plaits	H: DOPA dioxygenase-like (From Topology)	T: DOPA dioxygenase-like	F: PF08883	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.70.1240	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	DOPA-like domains	CATH (4.3.0)
B	3.30.70.1240	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	DOPA-like domains	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF08883	Dopa 4,5-dioxygenase family (DOPA_dioxygen)	Dopa 4,5-dioxygenase family	This family of proteins are related to Swiss:P87064 a DOPA 4,5-dioxygenase that is involved in synthesis of betalain. DOPA-dioxygenase is the key enzyme involved in betalain biosynthesis. It converts 3,4-dihydroxyphenylalanine to betalamic acid, a ye ...	This family of proteins are related to Swiss:P87064 a DOPA 4,5-dioxygenase that is involved in synthesis of betalain. DOPA-dioxygenase is the key enzyme involved in betalain biosynthesis. It converts 3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Putative dioxygenase	oxidoreductase activity catalytic activity dioxygenase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR023389	DOPA-like superfamily	Homologous Superfamily
A, B	IPR014980	Dopa 4,5-dioxygenase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.