2NVV | pdb_00002nvv

Crystal Structure of the Putative Acetyl-CoA hydrolase/transferase PG1013 from Porphyromonas gingivalis, Northeast Structural Genomics Target PgR16.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2nvva1	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	automated matches	automated matches	(Porphyromonas gingivalis W83 ) [TaxId: 242619 ],	SCOPe (2.08)
B	d2nvvb1	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	automated matches	automated matches	(Porphyromonas gingivalis W83 ) [TaxId: 242619 ],	SCOPe (2.08)
C	d2nvvc1	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	automated matches	automated matches	(Porphyromonas gingivalis W83 ) [TaxId: 242619 ],	SCOPe (2.08)
D	d2nvvd1	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	automated matches	automated matches	(Porphyromonas gingivalis W83 ) [TaxId: 242619 ],	SCOPe (2.08)
E	d2nvve1	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	automated matches	automated matches	(Porphyromonas gingivalis W83 ) [TaxId: 242619 ],	SCOPe (2.08)
F	d2nvvf1	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	automated matches	automated matches	(Porphyromonas gingivalis W83 ) [TaxId: 242619 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e2nvvA1	A: a/b three-layered sandwiches	X: Profilin-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v294.1)
B	HTHP	e2nvvB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (v294.1)
C	HTHP	e2nvvC1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (v294.1)
D	HTHP	e2nvvD1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (v294.1)
E	HTHP	e2nvvE1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (v294.1)
F	HTHP	e2nvvF1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF02550	Acetyl-CoA hydrolase/transferase N-terminal domain (AcetylCoA_hydro)	Acetyl-CoA hydrolase/transferase N-terminal domain	This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase EC:3.1.2.1 (Swiss:P32316) catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) EC:2.8.3.- (Swiss:P38946) produces succin ...	This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase EC:3.1.2.1 (Swiss:P32316) catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) EC:2.8.3.- (Swiss:P38946) produces succinyl-CoA, and acetate-CoA transferase EC:2.8.3.8 (Swiss:Q59323) utilises acyl-CoA and acetate to form acetyl-CoA.	Domain
A, B, C, D, E A, B, C, D, E, F	PF13336	Acetyl-CoA hydrolase/transferase C-terminal domain (AcetylCoA_hyd_C)	Acetyl-CoA hydrolase/transferase C-terminal domain	This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase EC:3.1.2.1 (Swiss:P32316) catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) EC:2.8.3.- (Swiss:P38946) produces succin ...	This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase EC:3.1.2.1 (Swiss:P32316) catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) EC:2.8.3.- (Swiss:P38946) produces succinyl-CoA, and acetate-CoA transferase EC:2.8.3.8 (Swiss:Q59323) utilises acyl-CoA and acetate to form acetyl-CoA.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Acetyl-CoA hydrolase/transferase family protein	acetate CoA-transferase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity CoA-transferase activity hydrolase activity, acting on ester bonds thiolester hydrolase activity deacylase activity hydrolase activity acetyl-CoA hydrolase activity acyl-CoA hydrolase activity cation binding ion binding binding acetate CoA-transferase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity CoA-transferase activity hydrolase activity, acting on ester bonds thiolester hydrolase activity deacylase activity hydrolase activity acetyl-CoA hydrolase activity acyl-CoA hydrolase activity cation binding ion binding binding metal ion binding small molecule binding	nucleoside phosphate metabolic process primary metabolic process acetyl-CoA metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process nucleoside phosphate metabolic process primary metabolic process acetyl-CoA metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process oxoacid metabolic process carboxylic acid metabolic process acetate metabolic process monocarboxylic acid metabolic process organic acid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR026888	Acetyl-CoA hydrolase/transferase, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR046433	Acetyl-CoA hydrolase/transferase	Family
A, B, C, D, E A, B, C, D, E, F	IPR037171	NagB/RpiA transferase-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR003702	Acetyl-CoA hydrolase/transferase, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR017821	Succinate CoA transferase	Family
A, B, C, D, E A, B, C, D, E, F	IPR038460	Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.