2NVO | pdb_00002nvo

Crystal structure of Deinococcus radiodurans RO (RSR) protein

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2nvoa1	Alpha and beta proteins (a/b)	vWA-like	vWA-like	automated matches	automated matches	(Deinococcus radiodurans ) [TaxId: 1299 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	TROVE domain-like	8092797	4001561	SCOP2 (2022-06-29)
A	SCOP2 Family	RoRNP C-terminal domain-like	8092798	4003127	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	TROVE domain-like	8092799	3001832	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	vWA-like	8092800	3000832	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TROVE	e2nvoA2	A: alpha superhelices	X: Repetitive alpha hairpins	H: TROVE domain-like (From Topology)	T: TROVE domain-like	F: TROVE	ECOD (1.6)
A	DUF2201	e2nvoA1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: vWA-like	F: DUF2201	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.410	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	von Willebrand factor, type A domain	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF05731	TROVE domain (TROVE)	TROVE domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Ro sixty-related protein, RSR	RNA binding binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding	-	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR008858	TROVE domain	Domain
A	IPR053680	Ro 60 kDa domain-containing protein	Family
A	IPR036465	von Willebrand factor A-like domain superfamily	Homologous Superfamily
A	IPR040322	RNA-binding protein RO60	Family
A	IPR056800	RNA-binding protein RO60, vWA domain	Domain
A	IPR037214	TROVE domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.