2LS0 | pdb_00002ls0

Solution Structure of the Target Recognition Domain of Zoocin A

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth 1]	SCOP2 Family	Zoocin TRD-like	8046138	4004898	SCOP2 (2022-06-29)
A [auth 1]	SCOP2 Superfamily	Zoocin TRD-like	8092959	3002648	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth 1]	ZoocinA_TRD	e2ls011	A: beta barrels	X: Target recognition domain of zoocin A (From Topology)	H: Target recognition domain of zoocin A (From Topology)	T: Target recognition domain of zoocin A	F: ZoocinA_TRD	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth 1]	2.40.50.670	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Target recognition domain of lytic exoenzyme	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth 1]	PF16775	Target recognition domain of lytic exoenzyme (ZoocinA_TRD)	Target recognition domain of lytic exoenzyme	ZoocinA_TRD is domain found downstream of various lytic enzymes, such as peptidase M23 and phage lysins. The domain is composed of strands of antiparallel beta sheet with one short alpha helix at the C-terminal end [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 1]	Zoocin A endopeptidase	peptidase activity catalytic activity, acting on a protein metalloendopeptidase activity hydrolase activity metallopeptidase activity catalytic activity endopeptidase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 1]	IPR050570	Bacterial cell wall metabolism enzyme	Family
A [auth 1]	IPR031898	Lytic exoenzyme, target recognition domain	Domain
A [auth 1]	IPR016047	M23ase, beta-sheet core domain	Domain
A [auth 1]	IPR038263	Lytic exoenzyme, target recognition domain superfamily	Homologous Superfamily
A [auth 1]	IPR011055	Duplicated hybrid motif	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.