2LRM | pdb_00002lrm

Assignment and structure of E coli periplasmic protein YmgD

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YmgD-lite	8045622	4004572	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	HdeA-like	8091084	3000453	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	HdeA-like	8091084	3000453	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Sigma70_r4	e2lrmA1	A: a/b three-layered sandwiches	X: LidA	H: LidA	T: LidA	F: Sigma70_r4	ECOD (v294.1)
B	Rrf2	e2lrmB1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: Rrf2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.890.30	Mainly Alpha	Orthogonal Bundle	10k-s Protein, Hypothetical Protein A	Chain A	CATH (4.3.0)
B	1.10.890.30	Mainly Alpha	Orthogonal Bundle	10k-s Protein, Hypothetical Protein A	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF16456	YmgD protein (YmgD)	YmgD protein	This family of proteins is found in bacteria. Proteins in this family are approximately 110 amino acids in length.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Uncharacterized protein ymgD	-	-	cellular anatomical structure extracellular region outer membrane-bounded periplasmic space cell envelope periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR038304	YmgD domain superfamily	Homologous Superfamily
A, B	IPR032497	Uncharacterised protein YmgD	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.