2LRK | pdb_00002lrk

Solution Structures of the IIA(Chitobiose)-HPr complex of the N,N'-Diacetylchitobiose

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C [auth B]	d2lrkb_	All alpha proteins	Spectrin repeat-like	Enzyme IIa from lactose specific PTS, IIa-lac	automated matches	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
D [auth C]	d2lrkc_	All alpha proteins	Spectrin repeat-like	Enzyme IIa from lactose specific PTS, IIa-lac	automated matches	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B [auth A]	d2lrka_	All alpha proteins	Spectrin repeat-like	Enzyme IIa from lactose specific PTS, IIa-lac	automated matches	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
A [auth D]	d2lrkd_	Alpha and beta proteins (a+b)	HPr-like	HPr-like	HPr-like	Histidine-containing phosphocarrier protein (HPr)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth B]	SCOP2B Superfamily	Enzyme IIa from lactose specific PTS, IIa-lac	8078911	3001316	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Enzyme IIa from lactose specific PTS, IIa-lac	8078911	3001316	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Enzyme IIa from lactose specific PTS, IIa-lac	8078911	3001316	SCOP2B (2022-06-29)
A [auth D]	SCOP2B Superfamily	HPr-like	8035735	3000259	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth B]	ABC_tran	e2lrkB1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: ABC_tran	ECOD (develop294)
D [auth C]	ABC_tran	e2lrkC1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: ABC_tran	ECOD (develop294)
B [auth A]	PK_Tyr_Ser-Thr	e2lrkA1	A: alpha bundles	X: P-loop domains-like	H: RIFT-related	T: FMN-binding split barrel 2	F: PK_Tyr_Ser-Thr	ECOD (develop294)
A [auth D]	PK_Tyr_Ser-Thr	e2lrkD1	A: alpha bundles	X: P-loop domains-like	H: RIFT-related	T: FMN-binding split barrel 2	F: PK_Tyr_Ser-Thr	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth B]	1.20.58.80	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
D [auth C]	1.20.58.80	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
B [auth A]	1.20.58.80	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
A [auth D]	3.30.1340.10	Alpha Beta	2-Layer Sandwich	Histidine-containing Protein	Chain: A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth A], C [auth B], D [auth C]	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit (PTS_IIA)	PTS system, Lactose/Cellobiose specific IIA subunit	The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structural ...	The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion [1]. Separation into subunits is thought to occur after phosphorylation.	Domain
A [auth D]	PF00381	PTS HPr component phosphorylation site (PTS-HPr)	PTS HPr component phosphorylation site		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth A], C [auth B], D [auth C]	N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component	protein-phosphocysteine-N,N'-diacetylchitobiose phosphotransferase system transporter activity active transmembrane transporter activity protein-phosphocysteine-sugar phosphotransferase activity transporter activity transferase activity carbohydrate transmembrane transporter activity transmembrane transporter activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups	localization N,N'-diacetylchitobiose import transport carbohydrate derivative transport establishment of localization import into cell phosphoenolpyruvate-dependent sugar phosphotransferase system import across plasma membrane carbohydrate import across plasma membrane carbohydrate transport transmembrane transport cellular process carbohydrate transmembrane transport	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex transmembrane transporter complex membrane membrane protein complex transporter complex
A [auth D]	Phosphocarrier protein HPr	enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity protein binding binding antisigma factor binding molecular function inhibitor activity enzyme inhibitor activity transferase activity phosphotransferase activity, nitrogenous group as acceptor catalytic activity transferase activity, transferring phosphorus-containing groups	response to nutrient levels carbon utilization regulation of response to nutrient levels regulation of biological process response to stimulus regulation of response to stimulus regulation of carbon utilization biological regulation import into cell phosphoenolpyruvate-dependent sugar phosphotransferase system transport import across plasma membrane carbohydrate import across plasma membrane carbohydrate transport response to nutrient levels carbon utilization regulation of response to nutrient levels regulation of biological process response to stimulus regulation of response to stimulus regulation of carbon utilization biological regulation import into cell phosphoenolpyruvate-dependent sugar phosphotransferase system transport import across plasma membrane carbohydrate import across plasma membrane carbohydrate transport establishment of localization transmembrane transport localization cellular process carbohydrate transmembrane transport monosaccharide metabolic process regulation of cellular process catabolic process energy derivation by oxidation of organic compounds positive regulation of biological process carbohydrate catabolic process regulation of generation of precursor metabolites and energy regulation of polysaccharide metabolic process macromolecule catabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of glycogen metabolic process glucan metabolic process polysaccharide metabolic process regulation of small molecule metabolic process regulation of glycogen catabolic process glycogen catabolic process small molecule metabolic process positive regulation of macromolecule metabolic process positive regulation of glycogen catabolic process regulation of carbohydrate metabolic process regulation of glucose metabolic process positive regulation of cellular process carbohydrate metabolic process regulation of carbohydrate catabolic process glucan catabolic process glycogen metabolic process primary metabolic process hexose metabolic process regulation of catabolic process generation of precursor metabolites and energy regulation of macromolecule metabolic process positive regulation of catabolic process positive regulation of glucose metabolic process polysaccharide catabolic process metabolic process energy reserve metabolic process positive regulation of carbohydrate metabolic process macromolecule metabolic process positive regulation of small molecule metabolic process regulation of glycogen metabolic process regulation of metabolic process glucose metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth A], C [auth B], D [auth C]	IPR036542	Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily	Homologous Superfamily
B [auth A], C [auth B], D [auth C]	IPR003188	Phosphotransferase system, lactose/cellobiose-type IIA subunit	Family
A [auth D]	IPR002114	Phosphotransferase system, HPr serine phosphorylation site	PTM
A [auth D]	IPR001020	Phosphotransferase system, HPr histidine phosphorylation site	PTM
A [auth D]	IPR000032	Phosphocarrier protein HPr-like	Domain
A [auth D]	IPR050399	Phosphocarrier protein HPr	Family
A [auth D]	IPR035895	HPr-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.