2LOM | pdb_00002lom

Backbone structure of human membrane protein HIGD1A

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	HIG1 domain-like	8046179	4004933	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	HIG1 domain-like	8093014	3002662	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	HIG_1_N	e2lomA1	A: a/b three-layered sandwiches	X: HIG1 domain family member 1A	H: HIG1 domain family member 1A	T: HIG1 domain family member 1A	F: HIG_1_N	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF04588	Hypoxia induced protein conserved region (HIG_1_N)	Hypoxia induced protein conserved region	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	HIG1 domain family member 1A	-	cellular response to stimulus regulation of cellular component organization regulation of cellular process response to stimulus signaling negative regulation of signaling apoptotic mitochondrial changes negative regulation of biological process regulation of signal transduction regulation of release of cytochrome c from mitochondria regulation of programmed cell death negative regulation of cell communication cell communication cellular component organization negative regulation of release of cytochrome c from mitochondria cellular response to stimulus regulation of cellular component organization regulation of cellular process response to stimulus signaling negative regulation of signaling apoptotic mitochondrial changes negative regulation of biological process regulation of signal transduction regulation of release of cytochrome c from mitochondria regulation of programmed cell death negative regulation of cell communication cell communication cellular component organization negative regulation of release of cytochrome c from mitochondria negative regulation of apoptotic signaling pathway negative regulation of cellular process cellular component organization or biogenesis signal transduction mitochondrion organization regulation of biological process regulation of signaling negative regulation of cellular component organization negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process biological regulation cell death negative regulation of signal transduction regulation of organelle organization apoptotic signaling pathway organelle organization release of cytochrome c from mitochondria negative regulation of apoptotic process negative regulation of organelle organization regulation of response to stimulus regulation of mitochondrion organization regulation of cell communication cellular process apoptotic process programmed cell death regulation of apoptotic signaling pathway mitochondrial respirasome assembly protein-containing complex organization cellular component biogenesis cellular component assembly mitochondrial respiratory chain complex assembly protein-containing complex assembly cellular response to nutrient levels response to nutrient levels cellular response to stress response to stress response to starvation cellular response to glucose starvation cellular response to starvation response to decreased oxygen levels cellular response to oxygen levels cellular response to hypoxia cellular response to decreased oxygen levels cellular response to chemical stimulus response to hypoxia response to chemical response to oxygen levels response to abiotic stimulus	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope organelle membrane nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR007667	Hypoxia induced protein, domain	Domain
A	IPR050355	Mitochondrial Respiratory Supercomplex Factor 1	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q9Y241	IgA glomerulonephritis psoriasis

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Alpha-helical polytopic	Hypoxia induced protein	Hypoxia induced protein

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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