2K2Q
complex structure of the external thioesterase of the Surfactin-synthetase with a carrier domain
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2k2qa1 | All alpha proteins | Acyl carrier protein-like | ACP-like | Peptidyl carrier domain | Peptidyl carrier protein (PCP), thioester domain | (Brevibacillus parabrevis ) [TaxId: 54914 ], | SCOPe (2.08) |
A | d2k2qa2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Brevibacillus parabrevis ) [TaxId: 54914 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | ACP-like | 8041814 | 3001805 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PP-binding | e2k2qA1 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PP-binding | ECOD (1.6) |
B | Hydrolase_4_1 | e2k2qB1 | A: a/b three-layered sandwiches | X: alpha/beta-Hydrolases (From Topology) | H: alpha/beta-Hydrolases (From Topology) | T: alpha/beta-Hydrolases | F: Hydrolase_4_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.1200.10 | Mainly Alpha | Orthogonal Bundle | Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein | Chain A | CATH (4.3.0) |
B | 3.40.50.1820 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Alpha/Beta hydrolase fold, catalytic domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00550 | Phosphopantetheine attachment site (PP-binding) | Phosphopantetheine attachment site | A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ... | Domain | |
PF00975 | Thioesterase domain (Thioesterase) | Thioesterase domain | Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of v ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006162 | Phosphopantetheine attachment site | PTM | |
IPR009081 | Phosphopantetheine binding ACP domain | Domain | |
IPR010071 | Amino acid adenylation domain | Domain | |
IPR029058 | Alpha/Beta hydrolase fold | Homologous Superfamily | |
IPR020845 | AMP-binding, conserved site | Conserved Site | |
IPR023213 | Chloramphenicol acetyltransferase-like domain superfamily | Homologous Superfamily | |
IPR045851 | AMP-binding enzyme, C-terminal domain superfamily | Homologous Superfamily | |
IPR020806 | Polyketide synthase, phosphopantetheine-binding domain | Domain | |
IPR001242 | Condensation domain | Domain | |
IPR036736 | ACP-like superfamily | Homologous Superfamily | |
IPR025110 | AMP-binding enzyme, C-terminal domain | Domain | |
IPR000873 | AMP-dependent synthetase/ligase domain | Domain | |
IPR001031 | Thioesterase | Domain | |
IPR012223 | Thioesterase type II, NRPS/PKS/S-FAS | Family | |
IPR001031 | Thioesterase | Domain | |
IPR029058 | Alpha/Beta hydrolase fold | Homologous Superfamily |