2JH8 | pdb_00002jh8

The structure of bluetongue virus VP4 reveals a multifunctional RNA- capping production-line

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Orbivirus VP4 core-like	8046751	4005280	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8090795	3000118	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8090794	3000118	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8090791	3000118	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8090791	3000118	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8090790	3000118	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MMR_HSR1, NOG1	e2jh8A2	A: a/b three-layered sandwiches	X: Cation-proton antiporter	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: MMR_HSR1, NOG1	ECOD (v294.1)
A	Glrx-like	e2jh8A1	A: a/b three-layered sandwiches	X: Cation-proton antiporter	H: Cation-proton antiporter (CPA)	T: Cation-proton antiporter (CPA)	F: Glrx-like	ECOD (v294.1)
A	Orbi_VP4	e2jh8A4	A: a/b three-layered sandwiches	X: VP4 GT domain	H: VP4 GT domain	T: VP4 GT domain	F: Orbi_VP4	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
A	1.20.1280.200	Mainly Alpha	Up-down Bundle	Monooxygenase	Orbivirus VP4 core protein, C-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF05059	Orbivirus VP4 core protein (Orbi_VP4)	Orbivirus VP4 core protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	VP4 CORE PROTEIN	-	-	viral capsid icosahedral viral capsid virion component viral outer capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR043026	Orbivirus VP4 core, C-terminal	Homologous Superfamily
A	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
A	IPR007753	Orbivirus VP4 core	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.