2JBW | pdb_00002jbw

Crystal Structure of the 2,6-dihydroxy-pseudo-oxynicotine Hydrolase.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d2jbwd1	Alpha and beta proteins (a/b)	alpha/beta-Hydrolases	alpha/beta-Hydrolases	2,6-dihydropseudooxynicotine hydrolase-like	2,6-dihydropseudooxynicotine hydrolase	(Paenarthrobacter nicotinovorans ) [TaxId: 29320 ],	SCOPe (2.08)
D	d2jbwd2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Paenarthrobacter nicotinovorans ) [TaxId: 29320 ],	SCOPe (2.08)
C	d2jbwc1	Alpha and beta proteins (a/b)	alpha/beta-Hydrolases	alpha/beta-Hydrolases	2,6-dihydropseudooxynicotine hydrolase-like	2,6-dihydropseudooxynicotine hydrolase	(Paenarthrobacter nicotinovorans ) [TaxId: 29320 ],	SCOPe (2.08)
C	d2jbwc2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Paenarthrobacter nicotinovorans ) [TaxId: 29320 ],	SCOPe (2.08)
B	d2jbwb1	Alpha and beta proteins (a/b)	alpha/beta-Hydrolases	alpha/beta-Hydrolases	2,6-dihydropseudooxynicotine hydrolase-like	2,6-dihydropseudooxynicotine hydrolase	(Paenarthrobacter nicotinovorans ) [TaxId: 29320 ],	SCOPe (2.08)
B	d2jbwb2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Paenarthrobacter nicotinovorans ) [TaxId: 29320 ],	SCOPe (2.08)
A	d2jbwa1	Alpha and beta proteins (a/b)	alpha/beta-Hydrolases	alpha/beta-Hydrolases	2,6-dihydropseudooxynicotine hydrolase-like	2,6-dihydropseudooxynicotine hydrolase	(Paenarthrobacter nicotinovorans ) [TaxId: 29320 ],	SCOPe (2.08)
A	d2jbwa2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Paenarthrobacter nicotinovorans ) [TaxId: 29320 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	alpha/beta-Hydrolases	8034660	3000102	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	alpha/beta-Hydrolases	8034660	3000102	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	alpha/beta-Hydrolases	8034660	3000102	SCOP2B (2022-06-29)
A	SCOP2 Family	2, 6-dihydropseudooxynicotine hydrolase-like	8022280	4002428	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	alpha/beta-Hydrolases	8034660	3000102	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	ACR_tran	e2jbwD1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
C	ACR_tran	e2jbwC1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
B	ACR_tran	e2jbwB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.1)
A	Peptidase_S9, FrsA-like	e2jbwA1	A: a/b three-layered sandwiches	X: alpha/beta-Hydrolases	H: alpha/beta-Hydrolases	T: alpha/beta-Hydrolases	F: Peptidase_S9, FrsA-like	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.20.1440.110	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	acylaminoacyl peptidase	CATH (4.3.0)
D	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)
C	1.20.1440.110	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	acylaminoacyl peptidase	CATH (4.3.0)
C	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)
B	1.20.1440.110	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	acylaminoacyl peptidase	CATH (4.3.0)
B	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)
A	1.20.1440.110	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	acylaminoacyl peptidase	CATH (4.3.0)
A	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	2,6-DIHYDROXY-PSEUDO-OXYNICOTINE HYDROLASE	hydrolase activity catalytic activity	alkaloid metabolic process metabolic process cellular process nicotine metabolic process catabolic process nicotine catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR010520	Esterase FrsA-like	Family
A, B, C, D	IPR050261	FrsA esterase	Family
A, B, C, D	IPR029058	Alpha/Beta hydrolase fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.